Literature DB >> 29030664

SOFAST-HMQC-an efficient tool for metabolomics.

Soumita Ghosh1, Arjun Sengupta1, Kousik Chandra2.   

Abstract

Nuclear magnetic resonance (NMR)-based metabolomics relies mostly on 1D NMR; however, the technique is limited by overlap of the signals from the metabolites. In order to circumvent this problem, 2D 1H-13C correlation spectroscopy techniques are often used. However owing to poorer natural abundance and gyromagnetic ratio of 13C, the acquisition time for 2D 1H-13C heteronuclear single quantum coherence spectroscopy (HSQC) is long. This makes it almost impossible to be used in high throughput study. We have reported the application of selective optimized flip angle short transient (SOFAST) technique coupled to heteronuclear multiple quantum correlation (HMQC) along with nonlinear sampling (NUS) in urine and serum samples. This technique takes sevenfold less experimental time than the conventional 1H-13C HSQC experiment with retention of almost all molecular information. Hence, this can be used for high throughput study. Graphical abstract SOFAST-HMQC is a two-dimensional NMR technique that significantly decreases experimental time without loss of information. This technique is applied in complex biofluid samples that are used for high throughput metabolomics studies and shows promise of better information recovery than conventional two-dimensional NMR technique in shorter time.

Entities:  

Keywords:  NMR; SOFAST-HMQC; Serum; Urine

Mesh:

Year:  2017        PMID: 29030664     DOI: 10.1007/s00216-017-0676-0

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  4 in total

1.  Diagnosis of Bovine Respiratory Disease in feedlot cattle using blood 1H NMR metabolomics.

Authors:  C Blakebrough-Hall; A Dona; M J D'occhio; J McMeniman; L A González
Journal:  Sci Rep       Date:  2020-01-10       Impact factor: 4.379

2.  NMR-based metabolomics with enhanced sensitivity.

Authors:  Kousik Chandra; Samah Al-Harthi; Sujeesh Sukumaran; Fatimah Almulhim; Abdul-Hamid Emwas; Hanudatta S Atreya; Łukasz Jaremko; Mariusz Jaremko
Journal:  RSC Adv       Date:  2021-02-25       Impact factor: 3.361

Review 3.  NMR and Metabolomics-A Roadmap for the Future.

Authors:  David S Wishart; Leo L Cheng; Valérie Copié; Arthur S Edison; Hamid R Eghbalnia; Jeffrey C Hoch; Goncalo J Gouveia; Wimal Pathmasiri; Robert Powers; Tracey B Schock; Lloyd W Sumner; Mario Uchimiya
Journal:  Metabolites       Date:  2022-07-23

4.  NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

  4 in total

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