Literature DB >> 29029299

Weak Regulation of Many Targets Is Cumulatively Powerful-An Evolutionary Perspective on microRNA Functionality.

Yixin Zhao1, Xu Shen1, Tian Tang1, Chung-I Wu1,2.   

Abstract

Why do microRNAs (miRNAs) weakly repress so many targets such that most targets do not have phenotypic effects? An increasingly accepted view posits that weak targeting has no biological function and each miRNA effectively has only a few functional targets. Here, we review the evolutionary arguments for this postulate and find these arguments seriously flawed. In contrast, from the systems perspective, the power of broad and weak targeting may reside in the cumulative effects of all repressions, which collectively stabilize gene regulatory networks. This view predicts that miRNAs would show little tendency to downsize their target pools. A survey of "twin-miRs" production indeed validates this prediction.
© The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Keywords:  expression repression; mRNA degradation; microRNA target; network stability; regulatory network

Mesh:

Substances:

Year:  2017        PMID: 29029299     DOI: 10.1093/molbev/msx260

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  6 in total

1.  Spatiotemporal Regulation of a Single Adaptively Evolving Trans-Regulatory Element Contributes to Spermatogenetic Expression Divergence in Drosophila.

Authors:  Yumei Huang; Rui Shang; Guang-An Lu; Weishun Zeng; Chenglong Huang; Chuangchao Zou; Tian Tang
Journal:  Mol Biol Evol       Date:  2022-07-02       Impact factor: 8.800

2.  Downregulation of microRNA‑423‑5p suppresses TGF‑β1‑induced EMT by targeting FOXP4 in airway fibrosis.

Authors:  Yi Chen; Xuan Li; Yishi Li; Yongchang Wu; Guichuan Huang; Xin Wang; Shuliang Guo
Journal:  Mol Med Rep       Date:  2022-06-01       Impact factor: 3.423

3.  Direct measurement of pervasive weak repression by microRNAs and their role at the network level.

Authors:  Fuqiang Ma; Pei Lin; Qingjian Chen; Xuemei Lu; Yong E Zhang; Chung-I Wu
Journal:  BMC Genomics       Date:  2018-05-15       Impact factor: 3.969

4.  Death of new microRNA genes in Drosophila via gradual loss of fitness advantages.

Authors:  Guang-An Lu; Yixin Zhao; Hao Yang; Ao Lan; Suhua Shi; Zhongqi Liufu; Yumei Huang; Tian Tang; Jin Xu; Xu Shen; Chung-I Wu
Journal:  Genome Res       Date:  2018-07-26       Impact factor: 9.043

5.  miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts.

Authors:  Albert Pla; Xiangfu Zhong; Simon Rayner
Journal:  PLoS Comput Biol       Date:  2018-07-13       Impact factor: 4.475

6.  Functional Screening Identifies MicroRNA Regulators of Corin Activity and Atrial Natriuretic Peptide Biogenesis.

Authors:  Selvi Celik; Mardjaneh Karbalaei-Sadegh; Göran Rådegran; J Gustav Smith; Olof Gidlöf
Journal:  Mol Cell Biol       Date:  2019-11-12       Impact factor: 4.272

  6 in total

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