Literature DB >> 29029060

Metagenomics: novel enzymes from non-culturable microbes.

Francesca Berini1,2, Carmine Casciello1,2, Giorgia Letizia Marcone1,2, Flavia Marinelli1,2.   

Abstract

In the transition to the post-petroleum economy, there is a growing demand for novel enzymes with high process performances to replace traditional chemistry with a more 'green' approach. To date, microorganisms encompass the richest source of industrial biocatalysts, but the Earth-living microbiota remains largely untapped by using traditional isolation and cultivation methods. Metagenomics, which is culture independent, represents a powerful tool for discovering novel enzymes from unculturable microorganisms. Herein, we summarize the variety of approaches adopted for mining environmental DNA and, based on a systematic literature review, we provide a comprehensive list of 332 industrially relevant enzymes discovered from metagenomes within the last three years. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  environmental libraries; heterologous expression; industrial enzymes; metagenomics; screening

Mesh:

Substances:

Year:  2017        PMID: 29029060     DOI: 10.1093/femsle/fnx211

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  28 in total

1.  Metagenomic analysis of the human microbiome reveals the association between the abundance of gut bile salt hydrolases and host health.

Authors:  Baolei Jia; Dongbin Park; Yoonsoo Hahn; Che Ok Jeon
Journal:  Gut Microbes       Date:  2020-04-24

2.  Structural and mechanistic analysis of a β-glycoside phosphorylase identified by screening a metagenomic library.

Authors:  Spencer S Macdonald; Ankoor Patel; Veronica L C Larmour; Connor Morgan-Lang; Steven J Hallam; Brian L Mark; Stephen G Withers
Journal:  J Biol Chem       Date:  2018-01-09       Impact factor: 5.157

3.  Characterization of a novel thermophilic metagenomic GH5 endoglucanase heterologously expressed in Escherichia coli and Saccharomyces cerevisiae.

Authors:  Juan-José Escuder-Rodríguez; María González-Suarez; María-Eugenia deCastro; Almudena Saavedra-Bouza; Manuel Becerra; María-Isabel González-Siso
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-07-07

4.  Metagenomic Screening for Lipolytic Genes Reveals an Ecology-Clustered Distribution Pattern.

Authors:  Mingji Lu; Dominik Schneider; Rolf Daniel
Journal:  Front Microbiol       Date:  2022-06-10       Impact factor: 6.064

5.  Discovery of Two Novel Oxidases Using a High-Throughput Activity Screen.

Authors:  Elzbieta Rembeza; Alessandro Boverio; Marco W Fraaije; Martin K M Engqvist
Journal:  Chembiochem       Date:  2021-11-18       Impact factor: 3.461

6.  Ultrahigh-Throughput Detection of Enzymatic Alcohol Dehydrogenase Activity in Microfluidic Droplets with a Direct Fluorogenic Assay.

Authors:  Miriam Klaus; Paul Jannis Zurek; Tomasz S Kaminski; Ahir Pushpanath; Katharina Neufeld; Florian Hollfelder
Journal:  Chembiochem       Date:  2021-10-13       Impact factor: 3.461

Review 7.  Harnessing Marine Biocatalytic Reservoirs for Green Chemistry Applications through Metagenomic Technologies.

Authors:  Ignacio Abreu Castilla; David F Woods; F Jerry Reen; Fergal O'Gara
Journal:  Mar Drugs       Date:  2018-07-04       Impact factor: 5.118

8.  Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer.

Authors:  Ohana Y A Costa; Mattias de Hollander; Agata Pijl; Binbin Liu; Eiko E Kuramae
Journal:  Microbiome       Date:  2020-06-01       Impact factor: 14.650

9.  New Thermophilic α/β Class Epoxide Hydrolases Found in Metagenomes From Hot Environments.

Authors:  Erica Elisa Ferrandi; Christopher Sayer; Simone Antonio De Rose; Elisa Guazzelli; Carlotta Marchesi; Vahid Saneei; Michail N Isupov; Jennifer A Littlechild; Daniela Monti
Journal:  Front Bioeng Biotechnol       Date:  2018-10-16

10.  Characteristics of the First Protein Tyrosine Phosphatase with Phytase Activity from a Soil Metagenome.

Authors:  Genis Andrés Castillo Villamizar; Heiko Nacke; Laura Griese; Lydia Tabernero; Katrina Funkner; Rolf Daniel
Journal:  Genes (Basel)       Date:  2019-01-29       Impact factor: 4.096

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