Literature DB >> 29023547

Correction: Can quartet analyses combining maximum likelihood estimation and Hennigian logic overcome long branch attraction in phylogenomic sequence data?

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Abstract

[This corrects the article DOI: 10.1371/journal.pone.0183393.].

Year:  2017        PMID: 29023547      PMCID: PMC5638545          DOI: 10.1371/journal.pone.0186617

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


There are multiple errors in Fig 1. The authors have provided a corrected version here. The publisher apologizes for the error.
Fig 1

Flowchart of the PhyQuart algorithm.

Simplified flowchart showing a) each of the three possible quartet relationships for a set of 4 sequences (q1, q2, q3), b) the site-pattern classification of observed (N) symmetric () and asymmetric () support (), c) the determination of plesiomorphic (old) split-supporting site-patterns given two different polarities of character transformation along the internal branch of each possible quartet tree, and , and d) estimation of expected convergent split-supporting site-patterns (,) supporting quartet q1 in ML split pattern estimations using branch length and model optimization on constraint topologies of the other two possible quartet relationships (q2, q3).

Flowchart of the PhyQuart algorithm.

Simplified flowchart showing a) each of the three possible quartet relationships for a set of 4 sequences (q1, q2, q3), b) the site-pattern classification of observed (N) symmetric () and asymmetric () support (), c) the determination of plesiomorphic (old) split-supporting site-patterns given two different polarities of character transformation along the internal branch of each possible quartet tree, and , and d) estimation of expected convergent split-supporting site-patterns (,) supporting quartet q1 in ML split pattern estimations using branch length and model optimization on constraint topologies of the other two possible quartet relationships (q2, q3).
  1 in total

1.  Can quartet analyses combining maximum likelihood estimation and Hennigian logic overcome long branch attraction in phylogenomic sequence data?

Authors:  Patrick Kück; Mark Wilkinson; Christian Groß; Peter G Foster; Johann W Wägele
Journal:  PLoS One       Date:  2017-08-25       Impact factor: 3.240

  1 in total

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