Literature DB >> 29018850

Optimising minimal building blocks for addressable self-assembly.

Jim Madge1, Mark A Miller.   

Abstract

Addressable structures are characterised by the set of unique components from which they are built and by the specific location that each component occupies. For an addressable structure to self-assemble, its constituent building blocks must be encoded with sufficient information to define their positions with respect to each other and to enable them to navigate to those positions. DNA, with its vast scope for encoding specific interactions, has been successfully used to synthesise addressable systems of several hundred components. In this work we examine the complementary question of the minimal requirements for building blocks to undergo addressable self-assembly driven by a controlled temperature quench. Our testbed is an idealised model of cubic particles patterned with attractive interactions. We introduce a scheme for optimising the interactions using a variant of basin-hopping and a negative design principle. The designed building blocks are tested dynamically in simple target structures to establish how their complexity affects the limits of reliable self-assembly.

Year:  2017        PMID: 29018850     DOI: 10.1039/c7sm01646h

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  2 in total

Review 1.  The Art of Designing DNA Nanostructures with CAD Software.

Authors:  Martin Glaser; Sourav Deb; Florian Seier; Amay Agrawal; Tim Liedl; Shawn Douglas; Manish K Gupta; David M Smith
Journal:  Molecules       Date:  2021-04-15       Impact factor: 4.411

2.  Direct observation and rational design of nucleation behavior in addressable self-assembly.

Authors:  Martin Sajfutdinow; William M Jacobs; Aleks Reinhardt; Christoph Schneider; David M Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-11       Impact factor: 11.205

  2 in total

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