Literature DB >> 28990083

Confirmation and preliminary analysis of circRNAs potentially involved in human intervertebral disc degeneration.

Fei Zou1, Zhiwen Ding2, Jianyuan Jiang1, Feizhou Lu1, Xinlei Xia1, Xiaosheng Ma1.   

Abstract

Circular RNAs (circRNAs) are relatively recently identified noncoding RNAs that are ubiquitously expressed in human tissues and serve key functions in regulating gene expression. However, few studies have focused on human intervertebral disc degeneration (IDD) circRNAs, and the potential role of circRNAs in IDD has not been described in detail. In the present study, circRNA expression data was downloaded from the Gene Expression Omnibus database, and circRNAs in the human intervertebral disc were classified according to their length, indicating their uniform distribution of circRNAs of different lengths. Gene Ontology analysis was performed, which indicated that the differentially expressed circRNAs were mainly produced as a result of catalytic activity and from binding genes in the molecular function category, cell part genes in the cellular component category, and cellular and metabolic process genes in the biological process category. Classification analysis divided the circRNAs host genes into 16 classes; with nucleic acid binding genes ranked as the most common host gene type in IDD tissue. Pathway analysis indicated that >15 signaling pathways may serve different roles in IDD, and Wnt signaling, gonadotropin‑releasing hormone receptor and integrin signaling pathways may serve important roles. Using co‑expression analysis, 76 differentially expressed circRNAs and host gene pairs were identified, which were divided into four groups: CircRNAs and their host genes downregulated; circRNAs downregulated and host genes upregulated; circRNAs and their host genes upregulated; and circRNAs upregulated and host genes downregulated. Finally, hsa_circ_0008305 upregulation and hsa_circ_0041946 downregulation were validated in IDD using reverse transcription‑quantitative polymerase chain reaction. In conclusion, the findings of the present study may shed light on the potential roles of circRNAs in IDD and the possibility for their use in the diagnosis and clinical treatment of IDD in the future.

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Year:  2017        PMID: 28990083     DOI: 10.3892/mmr.2017.7718

Source DB:  PubMed          Journal:  Mol Med Rep        ISSN: 1791-2997            Impact factor:   2.952


  8 in total

1.  Profile analysis of circRNAs induced by porcine endemic diarrhea virus infection in porcine intestinal epithelial cells.

Authors:  Jianing Chen; Haiwen Wang; Li Jin; Liyuan Wang; Xin Huang; Wenwen Chen; Miaomiao Yan; Guangliang Liu
Journal:  Virology       Date:  2018-12-06       Impact factor: 3.616

Review 2.  Emerging role of circular RNA in intervertebral disc degeneration: Knowns and unknowns (Review).

Authors:  Yongjin Li; Suzhe Zhou; Peng Peng; Xuke Wang; Lilong Du; Zhenxin Huo; Baoshan Xu
Journal:  Mol Med Rep       Date:  2020-08-19       Impact factor: 2.952

3.  Knockdown of hsa_circ_0059955 Induces Apoptosis and Cell Cycle Arrest in Nucleus Pulposus Cells via Inhibiting Itchy E3 Ubiquitin Protein Ligase.

Authors:  Daliang Kong; Rui Gu; Chengtao Zhang; Ruofeng Yin
Journal:  Drug Des Devel Ther       Date:  2020-09-25       Impact factor: 4.162

4.  Profiling and functional analysis of differentially expressed circular RNAs identified in foot-and-mouth disease virus infected PK-15 cells.

Authors:  JinKe Yang; Bo Yang; Yong Wang; Ting Zhang; Yu Hao; HuiMei Cui; DengShuai Zhao; XingGuo Yuan; XueHui Chen; ChaoChao Shen; WenQian Yan; HaiXue Zheng; KeShan Zhang; Xiangtao Liu
Journal:  Vet Res       Date:  2022-03-21       Impact factor: 3.683

5.  Circular RNA hsa_circ_0083756 promotes intervertebral disc degeneration by sponging miR-558 and regulating TREM1 expression.

Authors:  Xianfa Du; Shunlun Chen; Haitao Cui; Yuming Huang; Jianru Wang; Hui Liu; Zemin Li; Chunxiang Liang; Zhaomin Zheng; Hua Wang
Journal:  Cell Prolif       Date:  2022-02-21       Impact factor: 8.755

6.  circ_001653 Silencing Promotes the Proliferation and ECM Synthesis of NPCs in IDD by Downregulating miR-486-3p-Mediated CEMIP.

Authors:  Shaoqian Cui; Lei Zhang
Journal:  Mol Ther Nucleic Acids       Date:  2020-04-29       Impact factor: 8.886

Review 7.  Circular RNAs in nucleus pulposus cell function and intervertebral disc degeneration.

Authors:  Zheng Li; Xin Chen; Derong Xu; Shugang Li; Matthew T V Chan; William K K Wu
Journal:  Cell Prolif       Date:  2019-10-16       Impact factor: 6.831

Review 8.  Emerging evidence on noncoding-RNA regulatory machinery in intervertebral disc degeneration: a narrative review.

Authors:  Hao-Yu Guo; Ming-Ke Guo; Zhong-Yuan Wan; Fang Song; Hai-Qiang Wang
Journal:  Arthritis Res Ther       Date:  2020-11-16       Impact factor: 5.156

  8 in total

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