Literature DB >> 28983138

Algorithm 971: An Implementation of a Randomized Algorithm for Principal Component Analysis.

Huamin Li1, George C Linderman1, Arthur Szlam2, Kelly P Stanton3, Yuval Kluger3, Mark Tygert4.   

Abstract

Recent years have witnessed intense development of randomized methods for low-rank approximation. These methods target principal component analysis and the calculation of truncated singular value decompositions. The present article presents an essentially black-box, foolproof implementation for Mathworks' MATLAB, a popular software platform for numerical computation. As illustrated via several tests, the randomized algorithms for low-rank approximation outperform or at least match the classical deterministic techniques (such as Lanczos iterations run to convergence) in basically all respects: accuracy, computational efficiency (both speed and memory usage), ease-of-use, parallelizability, and reliability. However, the classical procedures remain the methods of choice for estimating spectral norms and are far superior for calculating the least singular values and corresponding singular vectors (or singular subspaces).

Entities:  

Keywords:  Algorithms; PCA; Performance; Principal component analysis; SVD; singular value decomposition

Year:  2017        PMID: 28983138      PMCID: PMC5625842          DOI: 10.1145/3004053

Source DB:  PubMed          Journal:  ACM Trans Math Softw        ISSN: 0098-3500            Impact factor:   1.704


  2 in total

1.  FastSKAT: Sequence kernel association tests for very large sets of markers.

Authors:  Thomas Lumley; Jennifer Brody; Gina Peloso; Alanna Morrison; Kenneth Rice
Journal:  Genet Epidemiol       Date:  2018-06-22       Impact factor: 2.135

2.  Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data.

Authors:  George C Linderman; Manas Rachh; Jeremy G Hoskins; Stefan Steinerberger; Yuval Kluger
Journal:  Nat Methods       Date:  2019-02-11       Impact factor: 28.547

  2 in total

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