Literature DB >> 28982694

Developing Tools for Analysis of Renal Genomic Data: An Invitation to Participate.

Agustin Gonzalez-Vicente1, Ulrich Hopfer2, Jeffrey L Garvin2.   

Abstract

Keywords:  Bioinformatics; Crowd Contributions; Pathway Analysis; Renal Genomics; Systems Biology

Mesh：

Substances：

Year:  2017        PMID： 28982694      PMCID： PMC5698080          DOI： 10.1681/ASN.2017070811

Source DB:  PubMed          Journal:  J Am Soc Nephrol        ISSN： 1046-6673            Impact factor:   10.121


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  9 in total

1.  Deep Sequencing in Microdissected Renal Tubules Identifies Nephron Segment-Specific Transcriptomes.

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2.  Education in Nephrology Fellowship: A Survey-Based Needs Assessment.

Authors:  Robert W Rope; Kurtis A Pivert; Mark G Parker; Stephen M Sozio; Sylvia Bereknyei Merell
Journal:  J Am Soc Nephrol       Date:  2017-04-20       Impact factor: 10.121

3.  Relational Databases and Biomedical Big Data.

Authors:  N H Nisansa D de Silva
Journal:  Methods Mol Biol       Date:  2017

4.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

Review 5.  Ten years of pathway analysis: current approaches and outstanding challenges.

Authors:  Purvesh Khatri; Marina Sirota; Atul J Butte
Journal:  PLoS Comput Biol       Date:  2012-02-23       Impact factor: 4.475

6.  Comparative study on gene set and pathway topology-based enrichment methods.

Authors:  Michaela Bayerlová; Klaus Jung; Frank Kramer; Florian Klemm; Annalen Bleckmann; Tim Beißbarth
Journal:  BMC Bioinformatics       Date:  2015-10-22       Impact factor: 3.169

7.  PathVisio 3: an extendable pathway analysis toolbox.

Authors:  Martina Kutmon; Martijn P van Iersel; Anwesha Bohler; Thomas Kelder; Nuno Nunes; Alexander R Pico; Chris T Evelo
Journal:  PLoS Comput Biol       Date:  2015-02-23       Impact factor: 4.475

8.  WikiPathways: capturing the full diversity of pathway knowledge.

Authors:  Martina Kutmon; Anders Riutta; Nuno Nunes; Kristina Hanspers; Egon L Willighagen; Anwesha Bohler; Jonathan Mélius; Andra Waagmeester; Sravanthi R Sinha; Ryan Miller; Susan L Coort; Elisa Cirillo; Bart Smeets; Chris T Evelo; Alexander R Pico
Journal:  Nucleic Acids Res       Date:  2015-10-19       Impact factor: 16.971

9.  Mining biological pathways using WikiPathways web services.

Authors:  Thomas Kelder; Alexander R Pico; Kristina Hanspers; Martijn P van Iersel; Chris Evelo; Bruce R Conklin
Journal:  PLoS One       Date:  2009-07-30       Impact factor: 3.240
  9 in total
  5 in total

Review 1.  The tissue proteome in the multi-omic landscape of kidney disease.

Authors:  Markus M Rinschen; Julio Saez-Rodriguez
Journal:  Nat Rev Nephrol       Date:  2020-10-07       Impact factor: 28.314

Review 2.  Thick Ascending Limb Sodium Transport in the Pathogenesis of Hypertension.

Authors:  Agustin Gonzalez-Vicente; Fara Saez; Casandra M Monzon; Jessica Asirwatham; Jeffrey L Garvin
Journal:  Physiol Rev       Date:  2019-01-01       Impact factor: 37.312

3.  Transcriptomic analysis reveals inflammatory and metabolic pathways that are regulated by renal perfusion pressure in the outer medulla of Dahl-S rats.

Authors:  Louise C Evans; Alex Dayton; Chun Yang; Pengyuan Liu; Theresa Kurth; Kwang Woo Ahn; Steve Komas; Francesco C Stingo; Purushottam W Laud; Marina Vannucci; Mingyu Liang; Allen W Cowley
Journal:  Physiol Genomics       Date:  2018-03-30       Impact factor: 3.107

4.  Transcriptome signature for dietary fructose-specific changes in rat renal cortex: A quantitative approach to physiological relevance.

Authors:  Agustin Gonzalez-Vicente; Jeffrey L Garvin; Ulrich Hopfer
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Review 5.  AMP-Activated Protein Kinase as a Reprogramming Strategy for Hypertension and Kidney Disease of Developmental Origin.

Authors:  You-Lin Tain; Chien-Ning Hsu
Journal:  Int J Mol Sci       Date:  2018-06-12       Impact factor: 5.923
  5 in total

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