Literature DB >> 28980328

How and Why to Build a Unified Tree of Life.

Emily Jane McTavish1, Bryan T Drew2, Ben Redelings3, Karen A Cranston4.   

Abstract

Phylogenetic trees are a crucial backbone for a wide breadth of biological research spanning systematics, organismal biology, ecology, and medicine. In 2015, the Open Tree of Life project published a first draft of a comprehensive tree of life, summarizing digitally available taxonomic and phylogenetic knowledge. This paper reviews, investigates, and addresses the following questions as a follow-up to that paper, from the perspective of researchers involved in building this summary of the tree of life: Is there a tree of life and should we reconstruct it? Is available data sufficient to reconstruct the tree of life? Do we have access to phylogenetic inferences in usable form? Can we combine different phylogenetic estimates across the tree of life? And finally, what is the future of understanding the tree of life?
© 2017 The Authors. BioEssays Published by Wiley Periodicals, Inc.

Keywords:  data deposition; evolution; open science; phylogeny; tree of life

Mesh:

Year:  2017        PMID: 28980328     DOI: 10.1002/bies.201700114

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  3 in total

1.  Interactive Tree Of Life (iTOL) v4: recent updates and new developments.

Authors:  Ivica Letunic; Peer Bork
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

2.  Physcraper: a Python package for continually updated phylogenetic trees using the Open Tree of Life.

Authors:  Luna L Sánchez-Reyes; Martha Kandziora; Emily Jane McTavish
Journal:  BMC Bioinformatics       Date:  2021-06-29       Impact factor: 3.169

3.  OpenTree: A Python Package for Accessing and Analyzing Data from the Open Tree of Life.

Authors:  Emily Jane Mctavish; Luna Luisa Sánchez-Reyes; Mark T Holder
Journal:  Syst Biol       Date:  2021-10-13       Impact factor: 15.683

  3 in total

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