Literature DB >> 28974472

Stress2TF: a manually curated database of TF regulation in plant response to stress.

Xiaodan Zhang1, Chensong Yao2, Sicong Fu1, Hongdong Xuan3, Shuxian Wen1, Chao Liu1, Fangdong Li4, Aiguo Liu4, Shoudong Bi4, Shihua Zhang5, Shaowen Li6.   

Abstract

Considerable studies demonstrate that plant transcription factors (TFs) play key regulatory roles in abiotic/biotic stress conditions, such as drought and pathogen attack. However, there is no effort dedicated to curate experimentally validated stress-TF regulatory relationships from these individual reports into a central database, which put an obstacle in the exploration of stress-TF regulations in plants. To address this issue, we presented a literature-curated database 'Stress2TF' that currently documented 1533 regulatory relationships between 71 abiotic/biotic stresses and 558 TFs in 47 plant species. Each entry in Stress2TF contains detailed information about a stress-TF relationship such as plant name, stress name, TF and brief description of stress-TF relationship. Stress2TF provided a user-friendly interface for entry browse, search and download. In addition, a submission page and several useful tools (e.g., BLAST, network visualization) were integrated. Stress2TF may be a valuable resource for the research of stress-TF regulatory mechanisms in plants. Stress2TF is available at http://csgenomics.ahau.edu.cn/Stress2TF.
Copyright © 2017 Elsevier B.V. All rights reserved.

Keywords:  Database; Network; Plant transcription factor; Stress; Stress-TF regulation

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Year:  2017        PMID: 28974472     DOI: 10.1016/j.gene.2017.09.067

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  1 in total

Review 1.  Omics and CRISPR-Cas9 Approaches for Molecular Insight, Functional Gene Analysis, and Stress Tolerance Development in Crops.

Authors:  Muhammad Khuram Razzaq; Muqadas Aleem; Shahid Mansoor; Mueen Alam Khan; Saeed Rauf; Shahid Iqbal; Kadambot H M Siddique
Journal:  Int J Mol Sci       Date:  2021-01-28       Impact factor: 5.923

  1 in total

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