Literature DB >> 28973894

Molecular origin of the weak susceptibility of kinesin velocity to loads and its relation to the collective behavior of kinesins.

Qian Wang1, Michael R Diehl2,3, Biman Jana4, Margaret S Cheung1,5, Anatoly B Kolomeisky1,2,3, José N Onuchic6,3,7,8.   

Abstract

Motor proteins are active enzymatic molecules that support important cellular processes by transforming chemical energy into mechanical work. Although the structures and chemomechanical cycles of motor proteins have been extensively investigated, the sensitivity of a motor's velocity in response to a force is not well-understood. For kinesin, velocity is weakly influenced by a small to midrange external force (weak susceptibility) but is steeply reduced by a large force. Here, we utilize a structure-based molecular dynamic simulation to study the molecular origin of the weak susceptibility for a single kinesin. We show that the key step in controlling the velocity of a single kinesin under an external force is the ATP release from the microtubule-bound head. Only under large loading forces can the motor head release ATP at a fast rate, which significantly reduces the velocity of kinesin. It underpins the weak susceptibility that the velocity will not change at small to midrange forces. The molecular origin of this velocity reduction is that the neck linker of a kinesin only detaches from the motor head when pulled by a large force. This prompts the ATP binding site to adopt an open state, favoring ATP release and reducing the velocity. Furthermore, we show that two load-bearing kinesins are incapable of equally sharing the load unless they are very close to each other. As a consequence of the weak susceptibility, the trailing kinesin faces the challenge of catching up to the leading one, which accounts for experimentally observed weak cooperativity of kinesins motors.
Copyright © 2017 the Author(s). Published by PNAS.

Entities:  

Keywords:  collective behavior; kinesin; molecular mechanism; susceptibility

Mesh:

Substances:

Year:  2017        PMID: 28973894      PMCID: PMC5642713          DOI: 10.1073/pnas.1710328114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  52 in total

1.  Single kinesin molecules studied with a molecular force clamp.

Authors:  K Visscher; M J Schnitzer; S M Block
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  A structural change in the kinesin motor protein that drives motility.

Authors:  S Rice; A W Lin; D Safer; C L Hart; N Naber; B O Carragher; S M Cain; E Pechatnikova; E M Wilson-Kubalek; M Whittaker; E Pate; R Cooke; E W Taylor; R A Milligan; R D Vale
Journal:  Nature       Date:  1999-12-16       Impact factor: 49.962

3.  Feedback of the kinesin-1 neck-linker position on the catalytic site.

Authors:  Katrin Hahlen; Bettina Ebbing; Jörg Reinders; Judith Mergler; Albert Sickmann; Guenther Woehlke
Journal:  J Biol Chem       Date:  2006-05-08       Impact factor: 5.157

4.  Mechanical control of the directional stepping dynamics of the kinesin motor.

Authors:  Changbong Hyeon; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-24       Impact factor: 11.205

5.  Tug-of-war as a cooperative mechanism for bidirectional cargo transport by molecular motors.

Authors:  Melanie J I Müller; Stefan Klumpp; Reinhard Lipowsky
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-17       Impact factor: 11.205

6.  Internal strain regulates the nucleotide binding site of the kinesin leading head.

Authors:  Changbong Hyeon; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-07       Impact factor: 11.205

7.  Robustness and generalization of structure-based models for protein folding and function.

Authors:  Heiko Lammert; Alexander Schug; José N Onuchic
Journal:  Proteins       Date:  2009-12

8.  Tug-of-war between dissimilar teams of microtubule motors regulates transport and fission of endosomes.

Authors:  Virupakshi Soppina; Arpan Kumar Rai; Avin Jayesh Ramaiya; Pradeep Barak; Roop Mallik
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-28       Impact factor: 11.205

9.  Three-dimensional structure of myosin subfragment-1: a molecular motor.

Authors:  I Rayment; W R Rypniewski; K Schmidt-Bäse; R Smith; D R Tomchick; M M Benning; D A Winkelmann; G Wesenberg; H M Holden
Journal:  Science       Date:  1993-07-02       Impact factor: 47.728

10.  Crystal structure of the motor domain of the kinesin-related motor ncd.

Authors:  E P Sablin; F J Kull; R Cooke; R D Vale; R J Fletterick
Journal:  Nature       Date:  1996-04-11       Impact factor: 49.962

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  9 in total

Review 1.  Kinesin-2 motors: Kinetics and biophysics.

Authors:  Susan P Gilbert; Stephanie Guzik-Lendrum; Ivan Rayment
Journal:  J Biol Chem       Date:  2018-02-14       Impact factor: 5.157

2.  MAP7 regulates organelle transport by recruiting kinesin-1 to microtubules.

Authors:  Abdullah R Chaudhary; Hailong Lu; Elena B Krementsova; Carol S Bookwalter; Kathleen M Trybus; Adam G Hendricks
Journal:  J Biol Chem       Date:  2019-05-13       Impact factor: 5.157

3.  Mechanistic basis of propofol-induced disruption of kinesin processivity.

Authors:  Mandira Dutta; Susan P Gilbert; José N Onuchic; Biman Jana
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 11.205

4.  Force sharing and force generation by two teams of elastically coupled molecular motors.

Authors:  Mehmet Can Uçar; Reinhard Lipowsky
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

5.  Elongation factor-Tu can repetitively engage aminoacyl-tRNA within the ribosome during the proofreading stage of tRNA selection.

Authors:  Justin C Morse; Dylan Girodat; Benjamin J Burnett; Mikael Holm; Roger B Altman; Karissa Y Sanbonmatsu; Hans-Joachim Wieden; Scott C Blanchard
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-05       Impact factor: 11.205

6.  A model of processive walking and slipping of kinesin-8 molecular motors.

Authors:  Ping Xie
Journal:  Sci Rep       Date:  2021-04-13       Impact factor: 4.379

7.  A general theoretical framework to design base editors with reduced bystander effects.

Authors:  Qian Wang; Jie Yang; Zhicheng Zhong; Jeffrey A Vanegas; Xue Gao; Anatoly B Kolomeisky
Journal:  Nat Commun       Date:  2021-11-11       Impact factor: 14.919

8.  Molecular mechanisms of the interhead coordination by interhead tension in cytoplasmic dyneins.

Authors:  Qian Wang; Biman Jana; Michael R Diehl; Margaret S Cheung; Anatoly B Kolomeisky; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-17       Impact factor: 11.205

9.  Role of AAA3 Domain in Allosteric Communication of Dynein Motor Proteins.

Authors:  Mandira Dutta; Biman Jana
Journal:  ACS Omega       Date:  2019-12-03
  9 in total

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