Literature DB >> 28972864

DNA barcoding a nightmare taxon: assessing barcode index numbers and barcode gaps for sweat bees.

Jason Gibbs1,1.   

Abstract

There is an ongoing campaign to DNA barcode the world's >20 000 bee species. Recent revisions of Lasioglossum (Dialictus) (Hymenoptera: Halictidae) for Canada and the eastern United States were completed using integrative taxonomy. DNA barcode data from 110 species of L. (Dialictus) are examined for their value in identification and discovering additional taxonomic diversity. Specimen identification success was estimated using the best close match method. Error rates were 20% relative to current taxonomic understanding. Barcode Index Numbers (BINs) assigned using Refined Single Linkage Analysis (RESL) and barcode gaps using the Automatic Barcode Gap Discovery (ABGD) method were also assessed. RESL was incongruent for 44.5% of species, although some cryptic diversity may exist. Forty-three of 110 species were part of merged BINs with multiple species. The barcode gap is non-existent for the data set as a whole and ABGD showed levels of discordance similar to the RESL. The viridatum species-group is particularly problematic, so that DNA barcodes alone would be misleading for species delimitation and specimen identification. Character-based methods using fixed nucleotide substitutions could improve specimen identification success in some cases. The use of DNA barcoding for species discovery for standard taxonomic practice in the absence of a well-defined barcode gap is discussed.

Entities:  

Keywords:  Apoidea; Hymenoptera; délimitation des espèces; identification; species delimitation; taxonomie; taxonomy

Mesh:

Year:  2017        PMID: 28972864     DOI: 10.1139/gen-2017-0096

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  5 in total

1.  Trichoptera of Canada.

Authors:  Cory S Sheffield; Jeremy R deWaard; John C Morse; Andrew K Rasmussen
Journal:  Zookeys       Date:  2019-01-24       Impact factor: 1.546

2.  A DNA barcode-based survey of wild urban bees in the Loire Valley, France.

Authors:  Irene Villalta; Romain Ledet; Mathilde Baude; David Genoud; Christophe Bouget; Maxime Cornillon; Sébastien Moreau; Béatrice Courtial; Carlos Lopez-Vaamonde
Journal:  Sci Rep       Date:  2021-02-26       Impact factor: 4.379

3.  Manual Sampling and Video Observations: An Integrated Approach to Studying Flower-Visiting Arthropods in High-Mountain Environments.

Authors:  Marco Bonelli; Andrea Melotto; Alessio Minici; Elena Eustacchio; Luca Gianfranceschi; Mauro Gobbi; Morena Casartelli; Marco Caccianiga
Journal:  Insects       Date:  2020-12-11       Impact factor: 2.769

Review 4.  Current State of DNA Barcoding of Sciaroidea (Diptera)-Highlighting the Need to Build the Reference Library.

Authors:  Jostein Kjærandsen
Journal:  Insects       Date:  2022-01-29       Impact factor: 2.769

5.  Incongruent molecular and morphological variation in the crab spider Synemaglobosum (Araneae, Thomisidae) in Europe.

Authors:  Karin Urfer; Tamara Spasojevic; Seraina Klopfstein; Hannes Baur; Liana Lasut; Christian Kropf
Journal:  Zookeys       Date:  2021-12-17       Impact factor: 1.546

  5 in total

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