Literature DB >> 28970001

Plant Systems Biology at the Single-Cell Level.

Marc Libault1, Lise Pingault2, Prince Zogli2, John Schiefelbein3.   

Abstract

Our understanding of plant biology is increasingly being built upon studies using 'omics and system biology approaches performed at the level of the entire plant, organ, or tissue. Although these approaches open new avenues to better understand plant biology, they suffer from the cellular complexity of the analyzed sample. Recent methodological advances now allow plant scientists to overcome this limitation and enable biological analyses of single-cells or single-cell-types. Coupled with the development of bioinformatics and functional genomics resources, these studies provide opportunities for high-resolution systems analyses of plant phenomena. In this review, we describe the recent advances, current challenges, and future directions in exploring the biology of single-cells and single-cell-types to enhance our understanding of plant biology as a system.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Keywords:  -omics; Plant single-cell; computational modeling; system biology

Mesh:

Year:  2017        PMID: 28970001     DOI: 10.1016/j.tplants.2017.08.006

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  28 in total

Review 1.  Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development.

Authors:  L Lepiniec; M Devic; T J Roscoe; D Bouyer; D-X Zhou; C Boulard; S Baud; B Dubreucq
Journal:  Plant Reprod       Date:  2018-05-24       Impact factor: 3.767

2.  Transcriptomics of Arabidopsis sperm cells at single-cell resolution.

Authors:  Chandra Shekhar Misra; Mário R Santos; Mariana Rafael-Fernandes; Nuno P Martins; Marta Monteiro; Jörg D Becker
Journal:  Plant Reprod       Date:  2019-01-24       Impact factor: 3.767

3.  Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells.

Authors:  Kook Hui Ryu; Ling Huang; Hyun Min Kang; John Schiefelbein
Journal:  Plant Physiol       Date:  2019-02-04       Impact factor: 8.340

4.  How can biological modeling help cell biology?

Authors:  Elizabeth Sztul
Journal:  Cell Logist       Date:  2017-11-14

5.  Impact of genome duplication on secondary metabolite composition in non-cultivated species: a systematic meta-analysis.

Authors:  Michelle L Gaynor; Simone Lim-Hing; Chase M Mason
Journal:  Ann Bot       Date:  2020-08-13       Impact factor: 4.357

6.  Use of a duckweed species, Wolffiella hyalina, for whole-plant observation of physiological behavior at the single-cell level.

Authors:  Minako Isoda; Tokitaka Oyama
Journal:  Plant Biotechnol (Tokyo)       Date:  2018-12-25       Impact factor: 1.133

Review 7.  Advancing crop genomics from lab to field.

Authors:  Michael D Purugganan; Scott A Jackson
Journal:  Nat Genet       Date:  2021-05-06       Impact factor: 38.330

Review 8.  Plant multiscale networks: charting plant connectivity by multi-level analysis and imaging techniques.

Authors:  Xi Zhang; Yi Man; Xiaohong Zhuang; Jinbo Shen; Yi Zhang; Yaning Cui; Meng Yu; Jingjing Xing; Guangchao Wang; Na Lian; Zijian Hu; Lingyu Ma; Weiwei Shen; Shunyao Yang; Huimin Xu; Jiahui Bian; Yanping Jing; Xiaojuan Li; Ruili Li; Tonglin Mao; Yuling Jiao; Haiyun Ren; Jinxing Lin
Journal:  Sci China Life Sci       Date:  2021-03-12       Impact factor: 6.038

9.  Plant Proteomics and Systems Biology.

Authors:  Flavia Vischi Winck; André Luis Wendt Dos Santos; Maria Juliana Calderan-Rodrigues
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 10.  A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis.

Authors:  Aleksandr Bobrovskikh; Alexey Doroshkov; Stefano Mazzoleni; Fabrizio Cartenì; Francesco Giannino; Ulyana Zubairova
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

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