Literature DB >> 28968677

Big data management challenges in health research-a literature review.

Xiaoming Wang1, Carolyn Williams1, Zhen Hua Liu2, Joe Croghan1.   

Abstract

Big data management for information centralization (i.e. making data of interest findable) and integration (i.e. making related data connectable) in health research is a defining challenge in biomedical informatics. While essential to create a foundation for knowledge discovery, optimized solutions to deliver high-quality and easy-to-use information resources are not thoroughly explored. In this review, we identify the gaps between current data management approaches and the need for new capacity to manage big data generated in advanced health research. Focusing on these unmet needs and well-recognized problems, we introduce state-of-the-art concepts, approaches and technologies for data management from computing academia and industry to explore improvement solutions. We explain the potential and significance of these advances for biomedical informatics. In addition, we discuss specific issues that have a great impact on technical solutions for developing the next generation of digital products (tools and data) to facilitate the raw-data-to-knowledge process in health research.

Mesh:

Year:  2019        PMID: 28968677      PMCID: PMC6488939          DOI: 10.1093/bib/bbx086

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  13 in total

1.  Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.

Authors:  Fuyi Li; Yanan Wang; Chen Li; Tatiana T Marquez-Lago; André Leier; Neil D Rawlings; Gholamreza Haffari; Jerico Revote; Tatsuya Akutsu; Kuo-Chen Chou; Anthony W Purcell; Robert N Pike; Geoffrey I Webb; A Ian Smith; Trevor Lithgow; Roger J Daly; James C Whisstock; Jiangning Song
Journal:  Brief Bioinform       Date:  2019-11-27       Impact factor: 11.622

2.  A review of harmonization methods for studying dietary patterns.

Authors:  Venkata Sukumar Gurugubelli; Hua Fang; James M Shikany; Salvador V Balkus; Joshua Rumbut; Hieu Ngo; Honggang Wang; Jeroan J Allison; Lyn M Steffen
Journal:  Smart Health (Amst)       Date:  2022-01-13

3.  Cohort Identification for Translational Bioinformatics Studies.

Authors:  Tiffany A Lin; Zeynep Eroglu; Rodrigo Carvajal; Joseph Markowitz
Journal:  Methods Mol Biol       Date:  2021

Review 4.  Digital microbiology.

Authors:  A Egli; J Schrenzel; G Greub
Journal:  Clin Microbiol Infect       Date:  2020-06-27       Impact factor: 8.067

5.  Research data management in health and biomedical citizen science: practices and prospects.

Authors:  Ann Borda; Kathleen Gray; Yuqing Fu
Journal:  JAMIA Open       Date:  2019-12-09

6.  MAV-clic: management, analysis, and visualization of clinical data.

Authors:  Zeeshan Ahmed; Minjung Kim; Bruce T Liang
Journal:  JAMIA Open       Date:  2018-12-29

7.  A semi-automated pipeline for fulfillment of resource requests from a longitudinal Alzheimer's disease registry.

Authors:  Katelyn A McKenzie; Suzanne L Hunt; Genevieve Hulshof; Dinesh Pal Mudaranthakam; Kayla Meyer; Eric D Vidoni; Jeffrey M Burns; Jonathan D Mahnken
Journal:  JAMIA Open       Date:  2019-08-26

8.  Adapting data management education to support clinical research projects in an academic medical center.

Authors:  Kevin B Read
Journal:  J Med Libr Assoc       Date:  2019-01-01

9.  Artificial intelligence with multi-functional machine learning platform development for better healthcare and precision medicine.

Authors:  Zeeshan Ahmed; Khalid Mohamed; Saman Zeeshan; XinQi Dong
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

10.  Guidelines for Data Acquisition, Quality and Curation for Observational Research Designs (DAQCORD).

Authors:  Ari Ercole; Vibeke Brinck; Pradeep George; Ramona Hicks; Jilske Huijben; Michael Jarrett; Mary Vassar; Lindsay Wilson
Journal:  J Clin Transl Sci       Date:  2020-03-13
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