Literature DB >> 28967995

CASAAV: A CRISPR-Based Platform for Rapid Dissection of Gene Function In Vivo.

Nathan J VanDusen1, Yuxuan Guo1, Weiliang Gu2, William T Pu1,3.   

Abstract

In vivo loss-of-function studies are currently limited by the need for appropriate conditional knockout alleles. CRISPR/Cas9 is a powerful tool commonly used to induce loss-of-function mutations in vitro. However, CRISPR components have been difficult to deploy in vivo. To address this problem, we developed the CASAAV (CRISPR/Cas9/AAV-based somatic mutagenesis) platform, in which recombinant adeno-associated virus (AAV) is used to deliver tandem guide RNAs and Cre recombinase to Cre-dependent Cas9-P2A-GFP mice. Because Cre is under the control of a tissue-specific promoter, this system allows temporally controlled, cell type-selective knockout of virtually any gene to be obtained within a month using only one mouse line. Here, we focus on gene disruption in cardiomyocytes, but the system could easily be adapted to inactivate genes in other cell types transduced by AAV. © 2017 by John Wiley & Sons, Inc.
Copyright © 2017 John Wiley & Sons, Inc.

Entities:  

Keywords:  Adeno-associated virus; CRISPR; Cardiomyocyte; Genetic mosaic; Mouse model

Mesh:

Substances:

Year:  2017        PMID: 28967995      PMCID: PMC5654550          DOI: 10.1002/cpmb.46

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  11 in total

Review 1.  Survey and summary: transcription by RNA polymerases I and III.

Authors:  M R Paule; R J White
Journal:  Nucleic Acids Res       Date:  2000-03-15       Impact factor: 16.971

2.  Microhomology-based choice of Cas9 nuclease target sites.

Authors:  Sangsu Bae; Jiyeon Kweon; Heon Seok Kim; Jin-Soo Kim
Journal:  Nat Methods       Date:  2014-07       Impact factor: 28.547

3.  Characterization of genomic deletion efficiency mediated by clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells.

Authors:  Matthew C Canver; Daniel E Bauer; Abhishek Dass; Yvette Y Yien; Jacky Chung; Takeshi Masuda; Takahiro Maeda; Barry H Paw; Stuart H Orkin
Journal:  J Biol Chem       Date:  2014-06-06       Impact factor: 5.157

4.  A mouse model for adult cardiac-specific gene deletion with CRISPR/Cas9.

Authors:  Kelli J Carroll; Catherine A Makarewich; John McAnally; Douglas M Anderson; Lorena Zentilin; Ning Liu; Mauro Giacca; Rhonda Bassel-Duby; Eric N Olson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-30       Impact factor: 11.205

5.  In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9.

Authors:  Lukasz Swiech; Matthias Heidenreich; Abhishek Banerjee; Naomi Habib; Yinqing Li; John Trombetta; Mriganka Sur; Feng Zhang
Journal:  Nat Biotechnol       Date:  2014-10-19       Impact factor: 54.908

6.  AAV9 Delivery of shRNA to the Mouse Heart.

Authors:  Hiroko Wakimoto; J G Seidman; Roger S Y Foo; Jianming Jiang
Journal:  Curr Protoc Mol Biol       Date:  2016-07-01

7.  Upstream regulatory elements are necessary and sufficient for transcription of a U6 RNA gene by RNA polymerase III.

Authors:  G Das; D Henning; D Wright; R Reddy
Journal:  EMBO J       Date:  1988-02       Impact factor: 11.598

8.  Robust cardiomyocyte-specific gene expression following systemic injection of AAV: in vivo gene delivery follows a Poisson distribution.

Authors:  K-M R Prasad; Y Xu; Z Yang; S T Acton; B A French
Journal:  Gene Ther       Date:  2010-08-12       Impact factor: 5.250

9.  Novel Roles of GATA4/6 in the Postnatal Heart Identified through Temporally Controlled, Cardiomyocyte-Specific Gene Inactivation by Adeno-Associated Virus Delivery of Cre Recombinase.

Authors:  Terence W Prendiville; Haidong Guo; Zhiqiang Lin; Pingzhu Zhou; Sean M Stevens; Aibin He; Nathan VanDusen; Jinghai Chen; Li Zhong; Da-Zhi Wang; Guangping Gao; William T Pu
Journal:  PLoS One       Date:  2015-05-29       Impact factor: 3.240

10.  Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.

Authors:  John G Doench; Nicolo Fusi; Meagan Sullender; Mudra Hegde; Emma W Vaimberg; Jennifer Listgarten; Katherine F Donovan; Ian Smith; Zuzana Tothova; Craig Wilen; Robert Orchard; Herbert W Virgin; David E Root
Journal:  Nat Biotechnol       Date:  2016-01-18       Impact factor: 54.908

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  12 in total

1.  Imaging and Manipulating Pituitary Function in the Awake Mouse.

Authors:  Ombeline Hoa; Chrystel Lafont; Pierre Fontanaud; Anne Guillou; Yasmine Kemkem; Rhonda D Kineman; Raul M Luque; Tatiana Fiordelisio Coll; Paul Le Tissier; Patrice Mollard
Journal:  Endocrinology       Date:  2019-10-01       Impact factor: 4.736

Review 2.  Cardiomyocyte Maturation: New Phase in Development.

Authors:  Yuxuan Guo; William T Pu
Journal:  Circ Res       Date:  2020-04-09       Impact factor: 17.367

Review 3.  Gene Editing and Gene-Based Therapeutics for Cardiomyopathies.

Authors:  Joyce C Ohiri; Elizabeth M McNally
Journal:  Heart Fail Clin       Date:  2018-04       Impact factor: 3.179

4.  Genetic Mosaics for Greater Precision in Cardiovascular Research.

Authors:  Yuxuan Guo; William T Pu
Journal:  Circ Res       Date:  2018-06-22       Impact factor: 17.367

Review 5.  Regulation of cardiomyocyte maturation during critical perinatal window.

Authors:  Suraj Kannan; Chulan Kwon
Journal:  J Physiol       Date:  2019-01-15       Impact factor: 6.228

6.  Sarcomeres regulate murine cardiomyocyte maturation through MRTF-SRF signaling.

Authors:  Yuxuan Guo; Yangpo Cao; Blake D Jardin; Isha Sethi; Qing Ma; Behzad Moghadaszadeh; Emily C Troiano; Neil Mazumdar; Michael A Trembley; Eric M Small; Guo-Cheng Yuan; Alan H Beggs; William T Pu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

7.  Attenuation of Cardiomyocyte Hypertrophy via Depletion Myh7 using CASAAV.

Authors:  Peng Yue; Shutao Xia; Gang Wu; Lei Liu; Kaiyu Zhou; Hongyu Liao; Jiawen Li; Xiaolan Zheng; Yuxuan Guo; Yimin Hua; Donghui Zhang; Yifei Li
Journal:  Cardiovasc Toxicol       Date:  2020-10-23       Impact factor: 3.231

8.  Massively parallel in vivo CRISPR screening identifies RNF20/40 as epigenetic regulators of cardiomyocyte maturation.

Authors:  Nathan J VanDusen; Julianna Y Lee; Weiliang Gu; Catalina E Butler; Isha Sethi; Yanjiang Zheng; Justin S King; Pingzhu Zhou; Shengbao Suo; Yuxuan Guo; Qing Ma; Guo-Cheng Yuan; William T Pu
Journal:  Nat Commun       Date:  2021-07-21       Impact factor: 17.694

9.  Hierarchical and stage-specific regulation of murine cardiomyocyte maturation by serum response factor.

Authors:  Yuxuan Guo; Blake D Jardin; Pingzhu Zhou; Isha Sethi; Brynn N Akerberg; Christopher N Toepfer; Yulan Ai; Yifei Li; Qing Ma; Silvia Guatimosim; Yongwu Hu; Grigor Varuzhanyan; Nathan J VanDusen; Donghui Zhang; David C Chan; Guo-Cheng Yuan; Christine E Seidman; Jonathan G Seidman; William T Pu
Journal:  Nat Commun       Date:  2018-09-21       Impact factor: 14.919

Review 10.  Adeno-Associated Viral Vectors in Neuroscience Research.

Authors:  David L Haggerty; Gregory G Grecco; Kaitlin C Reeves; Brady Atwood
Journal:  Mol Ther Methods Clin Dev       Date:  2019-11-26       Impact factor: 6.698

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