Literature DB >> 28967006

Principles and methods used to grow and optimize crystals of protein-metallodrug adducts, to determine metal binding sites and to assign metal ligands.

Irene Russo Krauss1, Giarita Ferraro, Andrea Pica, José A Márquez, John R Helliwell, Antonello Merlino.   

Abstract

The characterization of the interactions between biological macromolecules (proteins and nucleic acids) and metal-based drugs is a fundamental prerequisite for understanding their mechanisms of action. X-ray crystallography enables the structural analysis of such complexes with atomic level detail. However, this approach requires the preparation of highly diffracting single crystals, the measurement of diffraction patterns and the structural analysis and interpretation of macromolecule-metal interactions from electron density maps. In this review, we describe principles and methods used to grow and optimize crystals of protein-metallodrug adducts, to determine metal binding sites and to assign and validate metal ligands. Examples from the literature and experience in our own laboratory are provided and key challenges are described, notably crystallization and molecular model refinement against the X-ray diffraction data.

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Year:  2017        PMID: 28967006     DOI: 10.1039/c7mt00219j

Source DB:  PubMed          Journal:  Metallomics        ISSN: 1756-5901            Impact factor:   4.526


  4 in total

1.  Refining the macromolecular model - achieving the best agreement with the data from X-ray diffraction experiment.

Authors:  Ivan G Shabalin; Przemyslaw J Porebski; Wladek Minor
Journal:  Crystallogr Rev       Date:  2018-09-21       Impact factor: 2.467

2.  Characterizing metal-binding sites in proteins with X-ray crystallography.

Authors:  Katarzyna B Handing; Ewa Niedzialkowska; Ivan G Shabalin; Misty L Kuhn; Heping Zheng; Wladek Minor
Journal:  Nat Protoc       Date:  2018-04-19       Impact factor: 13.491

3.  Reaction with Proteins of a Five-Coordinate Platinum(II) Compound.

Authors:  Giarita Ferraro; Tiziano Marzo; Maria Elena Cucciolito; Francesco Ruffo; Luigi Messori; Antonello Merlino
Journal:  Int J Mol Sci       Date:  2019-01-26       Impact factor: 5.923

4.  Unusual Structural Features in the Adduct of Dirhodium Tetraacetate with Lysozyme.

Authors:  Domenico Loreto; Giarita Ferraro; Antonello Merlino
Journal:  Int J Mol Sci       Date:  2021-02-02       Impact factor: 5.923

  4 in total

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