Literature DB >> 28964163

Systematic reduction of a detailed atrial myocyte model.

Daniel M Lombardo1, Wouter-Jan Rappel1.   

Abstract

Cardiac arrhythmias are a major health concern and often involve poorly understood mechanisms. Mathematical modeling is able to provide insights into these mechanisms which might result in better treatment options. A key element of this modeling is a description of the electrophysiological properties of cardiac cells. A number of electrophysiological models have been developed, ranging from highly detailed and complex models, containing numerous parameters and variables, to simplified models in which variables and parameters no longer directly correspond to electrophysiological quantities. In this study, we present a systematic reduction of the complexity of the detailed model of Koivumaki et al. using the recently developed manifold boundary approximation method. We reduce the original model, containing 42 variables and 37 parameters, to a model with only 11 variables and 5 parameters and show that this reduced model can accurately reproduce the action potential shape and restitution curve of the original model. The reduced model contains only five currents and all variables and parameters can be directly linked to electrophysiological quantities. Due to its reduction in complexity, simulation times of our model are decreased more than three-fold. Furthermore, fitting the reduced model to clinical data is much more efficient, a potentially important step towards patient-specific modeling.

Entities:  

Mesh:

Year:  2017        PMID: 28964163      PMCID: PMC5570595          DOI: 10.1063/1.4999611

Source DB:  PubMed          Journal:  Chaos        ISSN: 1054-1500            Impact factor:   3.642


  29 in total

1.  Filament instability and rotational tissue anisotropy: A numerical study using detailed cardiac models.

Authors:  Wouter-Jan Rappel
Journal:  Chaos       Date:  2001-03       Impact factor: 3.642

2.  Why are nonlinear fits to data so challenging?

Authors:  Mark K Transtrum; Benjamin B Machta; James P Sethna
Journal:  Phys Rev Lett       Date:  2010-02-10       Impact factor: 9.161

3.  Re-entrant cardiac arrhythmias in computational models of long QT myocardium.

Authors:  R H Clayton; A Bailey; V N Biktashev; A V Holden
Journal:  J Theor Biol       Date:  2001-01-21       Impact factor: 2.691

4.  Human atrial action potential and Ca2+ model: sinus rhythm and chronic atrial fibrillation.

Authors:  Eleonora Grandi; Sandeep V Pandit; Niels Voigt; Antony J Workman; Dobromir Dobrev; José Jalife; Donald M Bers
Journal:  Circ Res       Date:  2011-09-15       Impact factor: 17.367

5.  Mathematical simulations of ligand-gated and cell-type specific effects on the action potential of human atrium.

Authors:  Mary M Maleckar; Joseph L Greenstein; Natalia A Trayanova; Wayne R Giles
Journal:  Prog Biophys Mol Biol       Date:  2009-01-30       Impact factor: 3.667

6.  Study of atrial arrhythmias in a computer model based on magnetic resonance images of human atria.

Authors:  N. Virag; V. Jacquemet; C. S. Henriquez; S. Zozor; O. Blanc; J.-M. Vesin; E. Pruvot; L. Kappenberger
Journal:  Chaos       Date:  2002-09       Impact factor: 3.642

7.  Impact of sarcoplasmic reticulum calcium release on calcium dynamics and action potential morphology in human atrial myocytes: a computational study.

Authors:  Jussi T Koivumäki; Topi Korhonen; Pasi Tavi
Journal:  PLoS Comput Biol       Date:  2011-01-27       Impact factor: 4.475

8.  Computational mapping identifies localized mechanisms for ablation of atrial fibrillation.

Authors:  Sanjiv M Narayan; David E Krummen; Michael W Enyeart; Wouter-Jan Rappel
Journal:  PLoS One       Date:  2012-09-26       Impact factor: 3.240

9.  Universally sloppy parameter sensitivities in systems biology models.

Authors:  Ryan N Gutenkunst; Joshua J Waterfall; Fergal P Casey; Kevin S Brown; Christopher R Myers; James P Sethna
Journal:  PLoS Comput Biol       Date:  2007-08-15       Impact factor: 4.475

Review 10.  Epidemiology of atrial fibrillation: European perspective.

Authors:  Massimo Zoni-Berisso; Fabrizio Lercari; Tiziana Carazza; Stefano Domenicucci
Journal:  Clin Epidemiol       Date:  2014-06-16       Impact factor: 4.790

View more
  4 in total

Review 1.  Calibration of ionic and cellular cardiac electrophysiology models.

Authors:  Dominic G Whittaker; Michael Clerx; Chon Lok Lei; David J Christini; Gary R Mirams
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2020-02-21

2.  Reducing complexity and unidentifiability when modelling human atrial cells.

Authors:  C Houston; B Marchand; L Engelbert; C D Cantwell
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-05-25       Impact factor: 4.226

3.  Ion channel model reduction using manifold boundaries.

Authors:  Dominic G Whittaker; Jiahui Wang; Joseph G Shuttleworth; Ravichandra Venkateshappa; Jacob M Kemp; Thomas W Claydon; Gary R Mirams
Journal:  J R Soc Interface       Date:  2022-08-10       Impact factor: 4.293

4.  Simulating Notch-Dome Morphology of Action Potential of Ventricular Cell: How the Speeds of Positive and Negative Feedbacks on Transmembrane Voltage Can Influence the Health of a Cell?

Authors:  S H Sabzpoushan; A Ghajarjazy
Journal:  Biomed Res Int       Date:  2020-09-03       Impact factor: 3.411

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.