| Literature DB >> 28959441 |
Jean Uwingabiye1, Abdelhay Lemnouer1, Ignasi Roca2, Tarek Alouane3, Mohammed Frikh1, Bouchra Belefquih1, Fatna Bssaibis1, Adil Maleb1, Yassine Benlahlou1, Jalal Kassouati1, Nawfal Doghmi4, Abdelouahed Bait4, Charki Haimeur4, Lhoussain Louzi1, Azeddine Ibrahimi3, Jordi Vila2, Mostafa Elouennass1.
Abstract
BACKGROUND: Carbapenem-resistant Acinetobacter baumannii has recently been defined by the World Health Organization as a critical pathogen. The aim of this study was to compare clonal diversity and carbapenemase-encoding genes of A. baumannii isolates collected from colonized or infected patients and hospital environment in two intensive care units (ICUs) in Morocco.Entities:
Keywords: Acinetobacter Baumannii; Intensive care unit; Multidrug-resistant; OXA genes; Pulsed-field gel electrophoresis; blaNDM-1 gene
Year: 2017 PMID: 28959441 PMCID: PMC5615474 DOI: 10.1186/s13756-017-0262-4
Source DB: PubMed Journal: Antimicrob Resist Infect Control ISSN: 2047-2994 Impact factor: 4.887
Primers used for amplification of carbapenemase genes [23, 24]
| Primer | Sequence (5′→3′) | Amplicon size (bp) |
|---|---|---|
| OXA-51 | F: TAATGCTTTGATCGGCCTTG | 353 |
| OXA-23 | F: GATCGGATTGGAGAACCAGA | 501 |
| OXA-24 | F: GGTTAGTTGGCCCCCTTAAA | 246 |
| OXA-58 | F: AAGTATTGGGGCTTGTGCTG | 599 |
| NDM-1 | F:CATTTGCGGGGTTTTTAATG | 998 |
Distribution of PFGE pulsotypes according to the source of samples and status of pulsotypes
| PFGE pulsotype | Clinical isolates ( | Environmental isolates ( | Total ( | Status of pulsotypes |
|---|---|---|---|---|
| N (%) | N (%) | N (%) | ||
| 0001 | 7(14.9) | 1(2.8) | 8(9.6) | Intermediate pulsotype |
| 0002 | 1(2.1) | 2(5.6) | 3(3.6) | Minor pulsotype |
| 0003 | 1(2.1) | 4(11.1) | 5(6) | Intermediate pulsotype |
| 0004 | 2(2.4) | 0 | 2(4.3) | Minor pulsotype |
| 0005 | 3(6.4) | 4(11.1) | 7(8.4) | Intermediate pulsotype |
| 0006 | 1(2.1) | 0 | 1(1.2) | Minor pulsotype (Singleton) |
| 0007 | 16(34) | 3(8.3) | 19(22.9) | Major pulsotype |
| 0008 | 14(29.8) | 16(44.4) | 30(36.1) | Major pulsotype |
| 0009 | 2(4.3) | 6(16.7) | 8(9.6) | Intermediate pulsotype |
Epidemiological and clinical features of colonized or infected patients
| Variable | Total |
|---|---|
| Number of Male patients(%) | 30(75) |
| Mean Age (years) (Mean ± Standard deviation) | 52.45 ± 16.5 |
| Median length of ICU stay (days) [IQR] | 10 [5–16] |
| Patients with lenght of ICU stay ≥7 days (%) | 26(65) |
| Median duration of ICU stay prior to Colonization/infection(days) [IQR] | 6[1.5–16.5] |
| Respiratory distress | 7(17.5) |
| postoperative care | 10(25) |
| Cerebrovascular accidents | 13(32.5) |
| Severe polytrauma | 6(15) |
| Underlyning disease | N (%) |
| Diabetes | 7(17.5) |
| Chronic renal failure | 5(12.5) |
| Arterial hypertension | 6(15) |
| Chronic heart failure | 7(17.5) |
| Chronic obstructive pulmonary disease | 6(15) |
| Chronic smoking | 6(15) |
| Solid tumor | 7(17.5) |
| Invasive procedure | N (%) |
| Venous catheter | 11(27.5) |
| Arterial catheter | 4(10) |
| Urinary catheter | 26(65) |
| Mechanical ventilation | 24(60) |
| Nasogastric tube | 3(7.5) |
| Abdominal drain | 4(10) |
| Recent surgery | 4(10) |
| Parenteral nutrition | 30(77.5) |
| Dialysis | 3(7.5) |
| Septic shock N (%) | 14(76) |
| Previous antibiotic treatment N (%) | 35(87.5) |
| Amoxicillin/clavulanic acid N (%) | 10(25) |
| Ceftriaxone N (%) | 7(17.5) |
| Imipenem N (%) | 23(57.5) |
| Aminoglycosides N (%) | 19(47.5) |
| Colistin | 9(22.5) |
| Ciprofloxacin | 3(7.5) |
| Corticosteroid therapy N (%) | 19(47.5) |
| Death rate N (%) | 21(52.5) |
ICU Intensive care unit, IQR Interquartile rang
Fig. 1PFGE dendrogram of Clinical and environmental A.baumannii isolates (M-ICU: Medical intensive care unit, S-ICU: Surgical intensive care unit)