Literature DB >> 28955137

Epigenome-wide association studies for breast cancer risk and risk factors.

Annelie Johansson1, James M Flanagan1.   

Abstract

There have been six epigenome-wide association studies (EWAS) for breast cancer risk using blood DNA from prospective cohorts published thus far, and the only consistent finding is a global loss of methylation observed in breast cancer cases compared with controls, with no individual CpG sites passing validation across studies. In contrast, a more successful approach has been the identification of EWAS signatures of cancer risk factors such as smoking, body mass index, age and alcohol use with numerous validated CpG sites. These signatures may be used as a molecular test to quantify cancer risk associated with these factors. It is clear from the larger EWAS of risk exposures that similar-sized large collaborative studies may be needed to robustly identify DNA methylation signatures of breast cancer risk.

Entities:  

Keywords:  DNA methylation; EWAS; breast cancer risk; epigenetics; epigenome-wide association study

Year:  2017        PMID: 28955137      PMCID: PMC5612397     

Source DB:  PubMed          Journal:  Trends Cancer Res        ISSN: 0973-1040


  69 in total

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Journal:  J Natl Cancer Inst       Date:  2007-01-03       Impact factor: 13.506

2.  Constitutional methylation of the BRCA1 promoter is specifically associated with BRCA1 mutation-associated pathology in early-onset breast cancer.

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Journal:  Cancer Prev Res (Phila)       Date:  2010-10-26

3.  Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci.

Authors:  Ellen W Demerath; Weihua Guan; Megan L Grove; Stella Aslibekyan; Michael Mendelson; Yi-Hui Zhou; Åsa K Hedman; Johanna K Sandling; Li-An Li; Marguerite R Irvin; Degui Zhi; Panos Deloukas; Liming Liang; Chunyu Liu; Jan Bressler; Tim D Spector; Kari North; Yun Li; Devin M Absher; Daniel Levy; Donna K Arnett; Myriam Fornage; James S Pankow; Eric Boerwinkle
Journal:  Hum Mol Genet       Date:  2015-05-01       Impact factor: 6.150

4.  Aryl hydrocarbon receptor antagonists promote the expansion of human hematopoietic stem cells.

Authors:  Anthony E Boitano; Jian Wang; Russell Romeo; Laure C Bouchez; Albert E Parker; Sue E Sutton; John R Walker; Colin A Flaveny; Gary H Perdew; Michael S Denison; Peter G Schultz; Michael P Cooke
Journal:  Science       Date:  2010-08-05       Impact factor: 47.728

5.  Meta-analyses of observational and genetic association studies of folate intakes or levels and breast cancer risk.

Authors:  Sarah J Lewis; Roger M Harbord; Ross Harris; George Davey Smith
Journal:  J Natl Cancer Inst       Date:  2006-11-15       Impact factor: 13.506

6.  Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking.

Authors:  Natalie S Shenker; Silvia Polidoro; Karin van Veldhoven; Carlotta Sacerdote; Fulvio Ricceri; Mark A Birrell; Maria G Belvisi; Robert Brown; Paolo Vineis; James M Flanagan
Journal:  Hum Mol Genet       Date:  2012-11-21       Impact factor: 6.150

7.  Genome-wide methylation profiles reveal quantitative views of human aging rates.

Authors:  Gregory Hannum; Justin Guinney; Ling Zhao; Li Zhang; Guy Hughes; SriniVas Sadda; Brandy Klotzle; Marina Bibikova; Jian-Bing Fan; Yuan Gao; Rob Deconde; Menzies Chen; Indika Rajapakse; Stephen Friend; Trey Ideker; Kang Zhang
Journal:  Mol Cell       Date:  2012-11-21       Impact factor: 17.970

Review 8.  Is there a link between genome-wide hypomethylation in blood and cancer risk?

Authors:  Kevin Brennan; James M Flanagan
Journal:  Cancer Prev Res (Phila)       Date:  2012-11-07

9.  Oral contraceptives modify the effect of GATA3 polymorphisms on the risk of asthma at the age of 18 years via DNA methylation.

Authors:  Kranthi Guthikonda; Hongmei Zhang; Vikki G Nolan; Nelís Soto-Ramírez; Ali H Ziyab; Susan Ewart; Hasan S Arshad; Veeresh Patil; John W Holloway; Gabrielle A Lockett; Wilfried Karmaus
Journal:  Clin Epigenetics       Date:  2014-09-19       Impact factor: 6.551

Review 10.  Mechanisms of oestrogen receptor (ER) gene regulation in breast cancer.

Authors:  J S Carroll
Journal:  Eur J Endocrinol       Date:  2016-02-16       Impact factor: 6.664

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  11 in total

Review 1.  Disadvantaged neighborhoods and racial disparity in breast cancer outcomes: the biological link.

Authors:  Geetanjali Saini; Angela Ogden; Lauren E McCullough; Mylin Torres; Padmashree Rida; Ritu Aneja
Journal:  Cancer Causes Control       Date:  2019-05-20       Impact factor: 2.506

2.  A pilot study on DNA hypermethylation status in promoter region of P16 gene in patients with sporadic breast cancer.

Authors:  Kapil Bhatia; Pratibha Misra; Yan Naing Soe; M K Sibin; H S Batra; Divya Shelly; Sangeetha Sampath; Rakhi Negi; Bhasker Mukherjee; Rajat Jagani
Journal:  Med J Armed Forces India       Date:  2021-09-30

3.  Sparse principal component analysis based on genome network for correcting cell type heterogeneity in epigenome-wide association studies.

Authors:  Rui Miao; Qi Dang; Jie Cai; Hai-Hui Huang; Sheng-Li Xie; Yong Liang
Journal:  Med Biol Eng Comput       Date:  2022-07-04       Impact factor: 3.079

4.  Blood DNA methylation profiles improve breast cancer prediction.

Authors:  Jacob K Kresovich; Zongli Xu; Katie M O'Brien; Min Shi; Clarice R Weinberg; Dale P Sandler; Jack A Taylor
Journal:  Mol Oncol       Date:  2021-11-09       Impact factor: 7.449

Review 5.  Elucidating the Underlying Functional Mechanisms of Breast Cancer Susceptibility Through Post-GWAS Analyses.

Authors:  Mahdi Rivandi; John W M Martens; Antoinette Hollestelle
Journal:  Front Genet       Date:  2018-08-02       Impact factor: 4.599

6.  Blood DNA methylation and breast cancer risk: a meta-analysis of four prospective cohort studies.

Authors:  Clara Bodelon; Srikant Ambatipudi; Pierre-Antoine Dugué; Annelie Johansson; Joshua N Sampson; Belynda Hicks; Eric Karlins; Amy Hutchinson; Cyrille Cuenin; Veronique Chajès; Melissa C Southey; Isabelle Romieu; Graham G Giles; Dallas English; Silvia Polidoro; Manuela Assumma; Laura Baglietto; Paolo Vineis; Gianluca Severi; Zdenko Herceg; James M Flanagan; Roger L Milne; Montserrat Garcia-Closas
Journal:  Breast Cancer Res       Date:  2019-05-17       Impact factor: 6.466

7.  EWASdb: epigenome-wide association study database.

Authors:  Di Liu; Linna Zhao; Zhaoyang Wang; Xu Zhou; Xiuzhao Fan; Yong Li; Jing Xu; Simeng Hu; Miaomiao Niu; Xiuling Song; Ying Li; Lijiao Zuo; Changgui Lei; Meng Zhang; Guoping Tang; Min Huang; Nan Zhang; Lian Duan; Hongchao Lv; Mingming Zhang; Jin Li; Liangde Xu; Fanwu Kong; Rennan Feng; Yongshuai Jiang
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

8.  Epigenome-wide association study for lifetime estrogen exposure identifies an epigenetic signature associated with breast cancer risk.

Authors:  Annelie Johansson; Domenico Palli; Giovanna Masala; Sara Grioni; Claudia Agnoli; Rosario Tumino; Maria Concetta Giurdanella; Francesca Fasanelli; Carlotta Sacerdote; Salvatore Panico; Amalia Mattiello; Silvia Polidoro; Michael E Jones; Minouk J Schoemaker; Nick Orr; Katarzyna Tomczyk; Nichola Johnson; Olivia Fletcher; Vittorio Perduca; Laura Baglietto; Pierre-Antoine Dugué; Melissa C Southey; Graham G Giles; Dallas R English; Roger L Milne; Gianluca Severi; Srikant Ambatipudi; Cyrille Cuenin; Veronique Chajès; Isabelle Romieu; Zdenko Herceg; Anthony J Swerdlow; Paolo Vineis; James M Flanagan
Journal:  Clin Epigenetics       Date:  2019-04-30       Impact factor: 6.551

Review 9.  Epigenetic Modifications as Biomarkers of Tumor Development, Therapy Response, and Recurrence across the Cancer Care Continuum.

Authors:  Margaret L Thomas; Paola Marcato
Journal:  Cancers (Basel)       Date:  2018-04-01       Impact factor: 6.639

10.  Discovery of novel DNA methylation biomarkers for non-invasive sporadic breast cancer detection in the Latino population.

Authors:  Mónica Cappetta; Lucía Fernandez; Lucía Brignoni; Nora Artagaveytia; Carolina Bonilla; Miguel López; Manel Esteller; Bernardo Bertoni; María Berdasco
Journal:  Mol Oncol       Date:  2020-11-19       Impact factor: 7.449

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