Literature DB >> 28951536

Evaluation of the selectivity and sensitivity of isoform- and mutation-specific RAS antibodies.

Andrew M Waters1,2, Irem Ozkan-Dagliyan3, Angelina V Vaseva1,4, Nicole Fer2, Leslie A Strathern2, G Aaron Hobbs1, Basile Tessier-Cloutier5, William K Gillette2, Rachel Bagni2, Gordon R Whiteley2, James L Hartley2, Frank McCormick2,6, Adrienne D Cox1,3,7, Peter J Houghton4, David G Huntsman5, Mark R Philips8, Channing J Der9,3.   

Abstract

There is intense interest in developing therapeutic strategies for RAS proteins, the most frequently mutated oncoprotein family in cancer. Development of effective anti-RAS therapies will be aided by the greater appreciation of RAS isoform-specific differences in signaling events that support neoplastic cell growth. However, critical issues that require resolution to facilitate the success of these efforts remain. In particular, the use of well-validated anti-RAS antibodies is essential for accurate interpretation of experimental data. We evaluated 22 commercially available anti-RAS antibodies with a set of distinct reagents and cell lines for their specificity and selectivity in recognizing the intended RAS isoforms and mutants. Reliability varied substantially. For example, we found that some pan- or isoform-selective anti-RAS antibodies did not adequately recognize their intended target or showed greater selectivity for another; some were valid for detecting G12D and G12V mutant RAS proteins in Western blotting, but none were valid for immunofluorescence or immunohistochemical analyses; and some antibodies recognized nonspecific bands in lysates from "Rasless" cells expressing the oncoprotein BRAFV600E Using our validated antibodies, we identified RAS isoform-specific siRNAs and shRNAs. Our results may help to ensure the accurate interpretation of future RAS studies.
Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2017        PMID: 28951536      PMCID: PMC5812265          DOI: 10.1126/scisignal.aao3332

Source DB:  PubMed          Journal:  Sci Signal        ISSN: 1945-0877            Impact factor:   8.192


  39 in total

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Authors:  C Glenn Begley; Lee M Ellis
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

2.  A gene expression signature associated with "K-Ras addiction" reveals regulators of EMT and tumor cell survival.

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Journal:  Cancer Cell       Date:  2009-06-02       Impact factor: 31.743

3.  Reproducibility crisis: Blame it on the antibodies.

Authors:  Monya Baker
Journal:  Nature       Date:  2015-05-21       Impact factor: 49.962

Review 4.  Drugging the undruggable RAS: Mission possible?

Authors:  Adrienne D Cox; Stephen W Fesik; Alec C Kimmelman; Ji Luo; Channing J Der
Journal:  Nat Rev Drug Discov       Date:  2014-10-17       Impact factor: 84.694

5.  K-Ras4A splice variant is widely expressed in cancer and uses a hybrid membrane-targeting motif.

Authors:  Frederick D Tsai; Mathew S Lopes; Mo Zhou; Helen Court; Odis Ponce; James J Fiordalisi; Jessica J Gierut; Adrienne D Cox; Kevin M Haigis; Mark R Philips
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-05       Impact factor: 11.205

6.  Biochemical and Structural Analysis of Common Cancer-Associated KRAS Mutations.

Authors:  John C Hunter; Anuj Manandhar; Martin A Carrasco; Deepak Gurbani; Sudershan Gondi; Kenneth D Westover
Journal:  Mol Cancer Res       Date:  2015-06-02       Impact factor: 5.852

7.  Cancer Statistics, 2017.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2017-01-05       Impact factor: 508.702

Review 8.  A genecentric Human Protein Atlas for expression profiles based on antibodies.

Authors:  Lisa Berglund; Erik Björling; Per Oksvold; Linn Fagerberg; Anna Asplund; Cristina Al-Khalili Szigyarto; Anja Persson; Jenny Ottosson; Henrik Wernérus; Peter Nilsson; Emma Lundberg; Asa Sivertsson; Sanjay Navani; Kenneth Wester; Caroline Kampf; Sophia Hober; Fredrik Pontén; Mathias Uhlén
Journal:  Mol Cell Proteomics       Date:  2008-10       Impact factor: 5.911

9.  A comprehensive survey of Ras mutations in cancer.

Authors:  Ian A Prior; Paul D Lewis; Carla Mattos
Journal:  Cancer Res       Date:  2012-05-15       Impact factor: 12.701

10.  VPS35 binds farnesylated N-Ras in the cytosol to regulate N-Ras trafficking.

Authors:  Mo Zhou; Heidi Wiener; Wenjuan Su; Yong Zhou; Caroline Liot; Ian Ahearn; John F Hancock; Mark R Philips
Journal:  J Cell Biol       Date:  2016-08-08       Impact factor: 10.539

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  25 in total

1.  Neratinib and entinostat combine to rapidly reduce the expression of K-RAS, N-RAS, Gαq and Gα11 and kill uveal melanoma cells.

Authors:  Laurence Booth; Jane L Roberts; Cindy Sander; Alshad S Lalani; John M Kirkwood; John F Hancock; Andrew Poklepovic; Paul Dent
Journal:  Cancer Biol Ther       Date:  2018-12-20       Impact factor: 4.742

2.  Validation of Isoform- and Mutation-Specific RAS Antibodies.

Authors:  Andrew M Waters; Channing J Der
Journal:  Methods Mol Biol       Date:  2021

3.  Distinct Binding Preferences between Ras and Raf Family Members and the Impact on Oncogenic Ras Signaling.

Authors:  Elizabeth M Terrell; David E Durrant; Daniel A Ritt; Nancy E Sealover; Erin Sheffels; Russell Spencer-Smith; Dominic Esposito; Yong Zhou; John F Hancock; Robert L Kortum; Deborah K Morrison
Journal:  Mol Cell       Date:  2019-10-09       Impact factor: 17.970

4.  LZTR1 is a regulator of RAS ubiquitination and signaling.

Authors:  Johannes W Bigenzahn; Giovanna M Collu; Felix Kartnig; Melanie Pieraks; Gregory I Vladimer; Leonhard X Heinz; Vitaly Sedlyarov; Fiorella Schischlik; Astrid Fauster; Manuele Rebsamen; Katja Parapatics; Vincent A Blomen; André C Müller; Georg E Winter; Robert Kralovics; Thijn R Brummelkamp; Marek Mlodzik; Giulio Superti-Furga
Journal:  Science       Date:  2018-11-15       Impact factor: 47.728

5.  KRAS Oncoprotein Expression Is Regulated by a Self-Governing eIF5A-PEAK1 Feed-Forward Regulatory Loop.

Authors:  Ken Fujimura; Huawei Wang; Felicia Watson; Richard L Klemke
Journal:  Cancer Res       Date:  2018-01-10       Impact factor: 12.701

6.  The G protein signaling regulator RGS3 enhances the GTPase activity of KRAS.

Authors:  Chuanchuan Li; Alberto Vides; Dongsung Kim; Jenny Y Xue; Yulei Zhao; Piro Lito
Journal:  Science       Date:  2021-10-07       Impact factor: 63.714

Review 7.  Small GTPase RAS in multiple sclerosis - exploring the role of RAS GTPase in the etiology of multiple sclerosis.

Authors:  Samantha Messina
Journal:  Small GTPases       Date:  2018-09-18

8.  The ERBB network facilitates KRAS-driven lung tumorigenesis.

Authors:  Björn Kruspig; Tiziana Monteverde; Sarah Neidler; Andreas Hock; Emma Kerr; Colin Nixon; William Clark; Ann Hedley; Sarah Laing; Seth B Coffelt; John Le Quesne; Craig Dick; Karen H Vousden; Carla P Martins; Daniel J Murphy
Journal:  Sci Transl Med       Date:  2018-06-20       Impact factor: 17.956

9.  A photocleavable peptide-tagged mass probe for chemical mapping of epidermal growth factor receptor 2 (HER2) in human cancer cells.

Authors:  Liang Liu; Yuqiong Kuang; Zhongcheng Wang; Yun Chen
Journal:  Chem Sci       Date:  2020-09-30       Impact factor: 9.825

Review 10.  Cancer diagnostics based on plasma protein biomarkers: hard times but great expectations.

Authors:  Ulf Landegren; Maria Hammond
Journal:  Mol Oncol       Date:  2020-11-17       Impact factor: 6.603

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