| Literature DB >> 28951522 |
Mohammed Y Areeshi1, Raju K Mandal1, Sajad A Dar1,2, Arshad Jawed1, Mohd Wahid1, Mohtashim Lohani1, Aditya K Panda3, Bhartendu N Mishra4, Naseem Akhter5, Shafiul Haque6.
Abstract
BACKGROUND: Earlier studies have shown that interlukin-10 (IL-10) -1082 A>G gene polymorphism is implicated in susceptibility to pulmonary tuberculosis (PTB), but their results are inconsistent and inconclusive. In the present study, a meta-analysis was performed to analyze the potential association between IL-10 -1082 A>G gene polymorphism and PTB susceptibility.Entities:
Keywords: IL-10; Meta-analysis; genetic models; polymorphism; pulmonary tuberculosis
Mesh:
Substances:
Year: 2017 PMID: 28951522 PMCID: PMC5658633 DOI: 10.1042/BSR20170240
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
Figure 1PRISMA flow-diagram
The selection process (inclusion/exclusion) of the studies dealing with IL10 -1082 A>G (rs1800871) gene polymorphism and PTB risk.
Main characteristics of all studies included in the present meta-analysis
| First author and year [Ref.] | Country | Ethnicity | Controls | Cases | Study | Genotyping technique |
|---|---|---|---|---|---|---|
| Hu et al., 2015 [ | China | Asian | 480 | 120 | HB | ARMS PCR |
| Feng et al., 2014 [ | China | Asian | 191 | 191 | HB | PCR-RFLP |
| García-Elorriaga et al., 2013 [ | Mexico | Mixed | 47 | 40 | HB | TaqMan |
| Akgunes et al., 2011 [ | India | Asian | 30 | 30 | HB | PCR Probe |
| Liang et al., 2011 [ | China | Asian | 78 | 112 | HB | SNaPshot assay |
| Ansari et al., 2011 [ | Pakistan | Asian | 166 | 102 | HB,PB | ARMS PCR |
| Ben-Selma et al., 2011 [ | Tunisia | African | 95 | 76 | HB | ARMS PCR |
| Taype et al., 2010 [ | Peru | Caucasian | 510 | 500 | PB | PCR-RFLP |
| Mosaad et al., 2010 [ | Egypt | African | 98 | 26 | HB | ARMS PCR |
| Thye et al., 2009 [ | Ghana | African | 1968 | 1541 | HB | FRET |
| Ansari et al., 2009 [ | Pakistan | Asian | 188 | 111 | HB | ARMS PCR |
| Trajkov et al., 2009 [ | Macedonia | Caucasian | 301 | 75 | HB, PB | PCR-SSP |
| Selvaraj et al., 2008 [ | India | Asian | 183 | 155 | HB | ARMS PCR |
| Wu et al., 2008 [ | China | Asian | 111 | 183 | PB | PCR RFLP |
| Anand et al., 2007 [ | India | Asian | 143 | 132 | HB | ARMS PCR |
| Oh et al., 2007 [ | Korea | Asian | 117 | 145 | HB | ARMS PCR |
| Amirzargar et al., 2006 [ | Iran | Asian | 123 | 41 | HB | PCR-SSP |
| Shin et al., 2005 [ | Korea | Asian | 871 | 459 | HB | MAPA |
| Scola et al., 2003 [ | Italy | Caucasian | 114 | 45 | HB | ARMS PCR |
| López-Maderuelo et al., 2003 [ | Spain | Caucasian | 100 | 113 | HB | ARMS PCR |
| Delgado et al., 2002 [ | Cambodia | Asian | 106 | 358 | HB | PCR-SSP |
| Bellamy et al., 1998 [ | Gambia | African | 408 | 401 | HB | Hybridization |
Abbreviations: ARMS PCR, amplification-refractory mutation system polymerase chain reaction; FRET, fluorescence resonance energy transfer; HB, hospital based; MAPA, multiplex automated primer extension analysis; PB, population based; PCR-SSP, polymerase chain reaction with a sequence specific primers.
Genotypic distribution of IL-10 -1082 A>G (rs1800896) gene polymorphism included in the meta-analysis
| First author and year | Controls | Cases | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Genotype | Minor allele | Genotype | Minor allele | HWE | |||||
| AA | GA | GG | MAF | AA | GA | GG | MAF | ||
| Hu et al., 2015 | 262 | 196 | 22 | 0.250 | 82 | 34 | 4 | 0.175 | 0.35 |
| Feng et al., 2014 | 171 | 18 | 2 | 0.057 | 164 | 24 | 3 | 0.078 | 0.08 |
| Elorriaga et al., 2013 | 25 | 18 | 4 | 0.276 | 27 | 11 | 2 | 0.187 | 0.01 |
| Akgunes et al., 2011 | 17 | 13 | 0 | 0.216 | 15 | 9 | 6 | 0.350 | 0.26 |
| Liang et al., 2011 | 69 | 9 | 0 | 0.057 | 100 | 12 | 0 | 0.053 | 0.11 |
| Ansari et al., 2011 | 31 | 118 | 17 | 0.457 | 23 | 64 | 15 | 0.460 | 0.04 |
| Ben-Selma et al., 2011 | 60 | 26 | 9 | 0.231 | 30 | 33 | 13 | 0.388 | 0.01 |
| Taype et al., 2010 | 347 | 153 | 10 | 0.169 | 333 | 147 | 20 | 0.187 | 0.28 |
| Mosaad et al., 2010 | 8 | 88 | 2 | 0.469 | 0 | 16 | 10 | 0.692 | 0.13 |
| Thye et al., 2009 | 1048 | 783 | 140 | 0.269 | 794 | 630 | 117 | 0.280 | 0.27 |
| Ansari et al., 2009 | 32 | 136 | 20 | 0.468 | 21 | 71 | 19 | 0.490 | 0.03 |
| Trajkov et al., 2009 | 70 | 212 | 17 | 0.411 | 17 | 48 | 10 | 0.453 | 0.04 |
| Selvaraj et al., 2008 | 108 | 69 | 6 | 0.221 | 102 | 42 | 5 | 0.174 | 0.83 |
| Wu et al., 2008 | 104 | 18 | 0 | 0.073 | 48 | 12 | 1 | 0.114 | 0.98 |
| Anand et al., 2007 | 73 | 61 | 6 | 0.260 | 74 | 55 | 3 | 0.231 | 0.01 |
| Oh et al., 2007 | 45 | 53 | 19 | 0.388 | 98 | 43 | 4 | 0.175 | 0.95 |
| Amirzargar et al., 2006 | 18 | 79 | 5 | 0.436 | 7 | 31 | 2 | 0.437 | 0.04 |
| Shin et al., 2005 | 718 | 124 | 9 | 0.083 | 394 | 53 | 2 | 0.063 | 0.47 |
| Scola et al., 2003 | 13 | 77 | 24 | 0.548 | 6 | 22 | 17 | 0.622 | 0.05 |
| Maderuelo et al., 2003 | 21 | 50 | 29 | 0.540 | 33 | 47 | 33 | 0.501 | 0.91 |
| Delgado et al., 2002 | 39 | 64 | 3 | 0.330 | 86 | 259 | 11 | 0.394 | 0.06 |
| Bellamy et al., 1998 | 179 | 184 | 45 | 0.335 | 165 | 185 | 11 | 0.286 | 0.07 |
Abbreviations: HWE, Hardy–Weinberg equilibrium; MAF, minor allele frequency;.
Quality assessment conducted according to the NOS for all the studies included in the meta-analysis
| First author and year [Ref.] | Quality indicators | ||
|---|---|---|---|
| Selection | Comparability | Exposure | |
| Hu et al., 2015 [ | *** | * | ** |
| Feng et al., 2014 [ | *** | * | ** |
| García-Elorriaga et al., 2013 [ | *** | * | ** |
| Akgunes et al., 2011 [ | ** | * | ** |
| Liang et al., 2011 [ | **** | ** | ** |
| Ansari et al., 2011 [ | *** | * | ** |
| Ben-Selma et al., 2011 [ | **** | * | ** |
| Taype et al., 2010 [ | **** | * | ** |
| Mosaad et al., 2010 [ | *** | * | ** |
| Thye et al., 2009 [ | **** | ** | ** |
| Ansari et al., 2009 [ | *** | * | ** |
| Trajkov et al., 2009 [ | *** | * | ** |
| Selvaraj et al., 2008 [ | **** | * | ** |
| Wu et al., 2008 [ | *** | * | *** |
| Prabhu Anand et al., 2007 [ | *** | * | *** |
| Oh et al., 2007 [ | ** | * | ** |
| Amirzargar et al., 2006 [ | ** | * | ** |
| Shin et al., 2005 [ | **** | * | ** |
| Scola et al., 2003 [ | ** | * | ** |
| López-Maderuelo et al., 2003 [ | *** | * | ** |
| Delgado et al., 2002 [ | *** | ** | ** |
| Bellamy et al., 1998 [ | *** | * | ** |
Figure 2Funnel plot: Begg’s Funnel plot for overall analysis.
Statistics to test publication bias and heterogeneity in meta-analysis: overall analysis
| Comparisons | Egger’s regression analysis | Heterogeneity analysis | Model used for the meta-analysis | ||||
|---|---|---|---|---|---|---|---|
| Intercept | 95% confidence interval | ||||||
| G vs. A | 0.134 | −1.53 to 1.80 | 0.868 | 78.171 | 0.001 | 73.13 | Random |
| GG vs. AA | 0.261 | −1.12 to 1.64 | 0.696 | 60.855 | 0.001 | 67.135 | Random |
| AG vs. AA | −0.494 | −1.68 to 0.69 | 0.396 | 48.356 | 0.001 | 56.572 | Random |
| GG + AG vs. AA | −0.293 | −1.63 to 1.04 | 0.651 | 60.090 | 0.001 | 65.052 | Random |
| GG vs. AA + AG | 0.420 | −1.10 to 1.94 | 0.570 | 69.612 | 0.001 | 71.270 | Random |
Figure 3Forest Plot: Sensitivity analysis for overall analysis.
Figure 4Forest plot: Overall analysis showing OR with 95% CI to evaluate the association of the IL10 -1082 A>G (rs1800871) gene polymorphism and PTB risk. Black squares represent the value of OR and the size of the square indicates the inverse proportion relative to its variance. Horizontal line is the 95% CI of OR.
Statistics to test publication bias and heterogeneity in the present meta-analysis: Asian population
| Comparisons | Egger’s regression analysis | Heterogeneity analysis | Model used for the meta-analysis | ||||
|---|---|---|---|---|---|---|---|
| Intercept | 95% confidence interval | ||||||
| G vs. A | 1.686 | −2.38 to 5.75 | 0.380 | 44.674 | 0.001 | 73.139 | Random |
| GG vs. AA | 1.018 | −1.08 to 3.88 | 0.446 | 24.674 | 0.010 | 55.419 | Random |
| AG vs. AA | 0.883 | −2.29 to 4.06 | 0.552 | 28.851 | 0.004 | 58.409 | Random |
| GG+AG vs. AA | 1.672 | −1.85 to 5.19 | 0.318 | 37.372 | 0.001 | 67.890 | Random |
| GG vs. AA+AG | 0.025 | −2.42 to 2.47 | 0.981 | 22.603 | 0.020 | 51.334 | Random |
Figure 5Forest plot: Data from the Asian population showing OR with 95% CI to evaluate the association of the IL10 -1082 A>G (rs1800871) gene polymorphism and PTB risk. Black squares represent the value of OR and the size of the square indicates the inverse proportion relative to its variance. Horizontal line is the 95% CI of OR.
Statistics to test publication bias and heterogeneity in the present meta-analysis: African population
| Comparisons | Egger’s regression analysis | Heterogeneity analysis | Model used for the present meta-analysis | ||||
|---|---|---|---|---|---|---|---|
| Intercept | 95% confidence interval | ||||||
| G vs. A | 2.415 | −7.48 to 12.31 | 0.403 | 21.824 | 0.001 | 86.254 | Random |
| GG vs. AA | 1.047 | −11.12 to 13.21 | 0.746 | 26.345 | 0.001 | 88.613 | Random |
| AG vs. AA | 1.562 | −2.28 to 5.40 | 0.222 | 6.646 | 0.084 | 54.862 | Fixed |
| GG + AG vs. AA | 1.610 | −4.12 to 7.34 | 0.350 | 10.073 | 0.018 | 70.216 | Random |
| GG vs. AA + AG | 1.486 | −13.42 to 16.40 | 0.709 | 35.484 | 0.001 | 91.545 | Random |
Figure 6Forest plot: Data from the African population showing OR with 95% CI to evaluate the association of the IL10 -1082 A>G (rs1800871) gene polymorphism and PTB risk. Black squares represent the value of OR and the size of the square indicates the inverse proportion relative to its variance. Horizontal line is the 95% CI of OR.
Statistics to test publication bias and heterogeneity in the present meta-analysis: Caucasian population
| Comparisons | Egger’s regression analysis | Heterogeneity analysis | Model used for the present meta-analysis | ||||
|---|---|---|---|---|---|---|---|
| Intercept | 95% confidence interval | ||||||
| G vs. A | 0.158 | −8.42 to 8.74 | 0.940 | 2.616 | 0.455 | 0.001 | Fixed |
| GG vs. AA | 2.859 | −16.58 to 22.30 | 0.590 | 5.366 | 0.147 | 44.089 | Fixed |
| AG vs. AA | −1.361 | −4.15 to 1.42 | 0.170 | 2.446 | 0.485 | 00.001 | Fixed |
| GG + AG vs. AA | −1.031 | −4.68 to 2.62 | 0.348 | 2.235 | 2.235 | 0.5250 | Fixed |
| GG vs. AA + AG | 8.205 | 3.75 to 12.65 | 0.015 | 4.744 | 0.192 | 36.760 | Fixed |
Figure 7Forest plot: Data from the Caucasian population showing OR with 95% CI to evaluate the association of the IL10 -1082 A>G (rs1800871) gene polymorphism and PTB risk. Black squares represent the value of OR and the size of the square indicates the inverse proportion relative to its variance. Horizontal line is the 95% CI of OR.