| Literature DB >> 28946861 |
Timothy D Read1,2, Robert A Petit1,2, Sandeep J Joseph1,2, Tauqeer Alam1,2, M Ryan Weil1,2, Maida Ahmad1,2, Ravila Bhimani1,2, Jocelyn S Vuong1,2, Chad P Haase1,2, D Harry Webb3, Milton Tan4,5, Alistair D M Dove3.
Abstract
Entities:
Year: 2017 PMID: 28946861 PMCID: PMC5612451 DOI: 10.1186/s12864-017-4138-z
Source DB: PubMed Journal: BMC Genomics ISSN: 1471-2164 Impact factor: 3.969
Fig. 3Overview of taxonomy of whale shark protein best matches to the nr database. Figure was constructed from best BLAST matches to the nr database using Krona [31] tool
Fig. 4Overview of best matches to the protein database that map to the Chordata taxonomy group
Fig. 5Phylogeny based on alignment of conserved single-copy proteins. Silhouettes are not to scale. Accessions: Petromyzon: GCA_000148955.1, Callorhinchus: GCA_000165045.2, Latimeria: GCA_000225785.1, Danio: GCA_000002035.3, Gadus: GCA_000231765.1, Gasterosteus: GCA_000180675.1, Oryzias: version MEDAKA1 (Ensembl), Oreochromis: GCA_000188235.1, Takifugu: GCA_000180615.2, Tetraodon
Project information
| Property | Term |
|---|---|
| Finishing quality | High quality draft |
| Libraries used | Illumina: paired end library; 454: single end library |
| Sequencing platforms | Illumina HiSeq 2000/454 GS FLX Titanium |
| Fold coverage | 30× |
| Assemblers | SOAPdenovo (v. 2.04) |
| Gene calling method | AUGUSTUS. Proteins matched against the NCBI nr database using BLASTP, and the INTERPRO profile database using InterProScan |
| Genbank ID | LVEK00000000.1 |
| GenBank Date of Release | 5.11.2016 |
| GOLD ID | Gp0102394 |
| BIOPROJECT | PRJNA255419 |