Literature DB >> 28945406

A Multiscale Description of Biomolecular Active Matter: The Chemistry Underlying Many Life Processes.

Gregory A Voth1.   

Abstract

This Commentary will describe the goal of developing and implementing novel, powerful, and integrated multiscale computer simulation methodology capable of accessing the large length and long time scales inherent in the behavior of biomolecular, multiprotein "active matter" complexes within the context of cellular biology. Examples include those involved in the actin-based cytoskeleton and its mechanochemistry. The primary objective is to connect detailed molecular and chemical properties with the key mesoscopic features manifest at the scales of cellular biology through a transformative theoretical and computer simulation approach, based on real physical and chemical interactions. This multiscale computational work would also make critical contact with rapidly developing experimental techniques such as super-resolution optical imaging, single molecule spectroscopy, and cryo-electron tomography, which are providing remarkable insight into the internal mesoscale self-organization and dynamics of cells.

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Year:  2017        PMID: 28945406     DOI: 10.1021/acs.accounts.6b00572

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  7 in total

1.  Large-Scale Molecular Dynamics Simulations of Cellular Compartments.

Authors:  Eric Wilson; John Vant; Jacob Layton; Ryan Boyd; Hyungro Lee; Matteo Turilli; Benjamín Hernández; Sean Wilkinson; Shantenu Jha; Chitrak Gupta; Daipayan Sarkar; Abhishek Singharoy
Journal:  Methods Mol Biol       Date:  2021

Review 2.  Computational approaches to macromolecular interactions in the cell.

Authors:  Ilya A Vakser; Eric J Deeds
Journal:  Curr Opin Struct Biol       Date:  2019-04-15       Impact factor: 6.809

3.  Building an extensible cell wall.

Authors:  Daniel J Cosgrove
Journal:  Plant Physiol       Date:  2022-06-27       Impact factor: 8.005

4.  Securing the future of research computing in the biosciences.

Authors:  Joanna Leng; Massa Shoura; Tom C B McLeish; Alan N Real; Mariann Hardey; James McCafferty; Neil A Ranson; Sarah A Harris
Journal:  PLoS Comput Biol       Date:  2019-05-16       Impact factor: 4.475

5.  Heat diffusion-related damping process in a highly precise coarse-grained model for nonlinear motion of SWCNT.

Authors:  Heeyuen Koh; Shohei Chiashi; Junichiro Shiomi; Shigeo Maruyama
Journal:  Sci Rep       Date:  2021-01-12       Impact factor: 4.379

Review 6.  Computational and theoretical approaches for studies of a lipid recognition protein on biological membranes.

Authors:  Eiji Yamamoto
Journal:  Biophys Physicobiol       Date:  2017-10-26

7.  Atomistic Basis of Microtubule Dynamic Instability Assessed Via Multiscale Modeling.

Authors:  Mahya Hemmat; David J Odde
Journal:  Ann Biomed Eng       Date:  2021-02-03       Impact factor: 3.934

  7 in total

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