Literature DB >> 28941033

BaitsTools: Software for hybridization capture bait design.

Michael G Campana1.   

Abstract

Nucleic acid hybridization capture is a principal technology in molecular ecology and genomics. Bait design, however, is a nontrivial task and few resources currently exist to automate the process. Here, I present baitstools, an open-source, user-friendly software package to facilitate the design of nucleic acid baits for hybridization capture. Published 2017. This article is a U.S. Government work and is in the public domain in the USA.

Keywords:  bait; hybridization capture; nucleic acid; software; targeted sequencing

Mesh：

Substances：

Year:  2017        PMID： 28941033     DOI： 10.1111/1755-0998.12721

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN： 1755-098X            Impact factor:   7.090


  7 in total

1.  Target capture sequencing reveals a monoclonal outbreak of respiratory syncytial virus B infections among adult hematologic patients.

Authors:  Claas Baier; Jiabin Huang; Kerstin Reumann; Daniela Indenbirken; Felicitas Thol; Christian Koenecke; Ella Ebadi; Albert Heim; Franz-Christoph Bange; Sibylle Haid; Thomas Pietschmann; Nicole Fischer
Journal:  Antimicrob Resist Infect Control       Date:  2022-06-21       Impact factor: 6.454

2.  Syotti: scalable bait design for DNA enrichment.

Authors:  Jarno N Alanko; Ilya B Slizovskiy; Daniel Lokshtanov; Travis Gagie; Noelle R Noyes; Christina Boucher
Journal:  Bioinformatics       Date:  2022-06-24       Impact factor: 6.931

3.  Marker Development for Phylogenomics: The Case of Orobanchaceae, a Plant Family with Contrasting Nutritional Modes.

Authors:  Xi Li; Baohai Hao; Da Pan; Gerald M Schneeweiss
Journal:  Front Plant Sci       Date:  2017-11-21       Impact factor: 5.753

4.  Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization.

Authors:  Grey T Gustafson; Alana Alexander; John S Sproul; James M Pflug; David R Maddison; Andrew E Z Short
Journal:  Ecol Evol       Date:  2019-06-11       Impact factor: 2.912

5.  Fishing for DNA? Designing baits for population genetics in target enrichment experiments: Guidelines, considerations and the new tool supeRbaits.

Authors:  Belén Jiménez-Mena; Hugo Flávio; Romina Henriques; Alice Manuzzi; Miguel Ramos; Dorte Meldrup; Janette Edson; Snaebjörn Pálsson; Guðbjörg Ásta Ólafsdóttir; Jennifer R Ovenden; Einar Eg Nielsen
Journal:  Mol Ecol Resour       Date:  2022-03-03       Impact factor: 8.678

6.  Population Genomics and Structure of the Critically Endangered Mariana Crow (Corvus kubaryi).

Authors:  Nandadevi Cortes-Rodriguez; Michael G Campana; Lainie Berry; Sarah Faegre; Scott R Derrickson; Renee Robinette Ha; Rebecca B Dikow; Christian Rutz; Robert C Fleischer
Journal:  Genes (Basel)       Date:  2019-03-01       Impact factor: 4.096

7.  New targets acquired: Improving locus recovery from the Angiosperms353 probe set.

Authors:  Todd G B McLay; Joanne L Birch; Bee F Gunn; Weixuan Ning; Jennifer A Tate; Lars Nauheimer; Elizabeth M Joyce; Lalita Simpson; Alexander N Schmidt-Lebuhn; William J Baker; Félix Forest; Chris J Jackson
Journal:  Appl Plant Sci       Date:  2021-06-14       Impact factor: 1.936
  7 in total

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