Literature DB >> 28938153

Massively parallel sequencing of 32 forensic markers using the Precision ID GlobalFiler™ NGS STR Panel and the Ion PGM™ System.

Zheng Wang1, Di Zhou2, Hui Wang3, Zhenjun Jia4, Jing Liu5, Xiaoqin Qian5, Chengtao Li6, Yiping Hou7.   

Abstract

Massively parallel sequencing (MPS) technologies have proved capable of sequencing the majority of the key forensic STR markers. By MPS, not only the repeat-length size but also sequence variations could be detected. Recently, Thermo Fisher Scientific has designed an advanced MPS 32-plex panel, named the Precision ID GlobalFiler™ NGS STR Panel, where the primer set has been designed specifically for the purpose of MPS technologies and the data analysis are supported by a new version HID STR Genotyper Plugin (V4.0). In this study, a series of experiments that evaluated concordance, reliability, sensitivity of detection, mixture analysis, and the ability to analyze case-type and challenged samples were conducted. In addition, 106 unrelated Han individuals were sequenced to perform genetic analyses of allelic diversity. As expected, MPS detected broader allele variations and gained higher power of discrimination and exclusion rate. MPS results were found to be concordant with current capillary electrophoresis methods, and single source complete profiles could be obtained stably using as little as 100pg of input DNA. Moreover, this MPS panel could be adapted to case-type samples and partial STR genotypes of the minor contributor could be detected up to 19:1 mixture. Aforementioned results indicate that the Precision ID GlobalFiler™ NGS STR Panel is reliable, robust and reproducible and have the potential to be used as a tool for human forensics.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Ion PGM™ System; Massively parallel sequencing (MPS); Precision ID GlobalFiler™ NGS STR Panel; Short tandem repeat (STR)

Mesh:

Substances:

Year:  2017        PMID: 28938153     DOI: 10.1016/j.fsigen.2017.09.004

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  10 in total

1.  Sequencing of human identification markers in an Uyghur population using the MiSeq FGxTM Forensic Genomics System.

Authors:  Halimureti Simayijiang; Niels Morling; Claus Børsting
Journal:  Forensic Sci Res       Date:  2020-09-10

2.  Population-scale whole genome sequencing identifies 271 highly polymorphic short tandem repeats from Japanese population.

Authors:  Satoshi Hirata; Kaname Kojima; Kazuharu Misawa; Olivier Gervais; Yosuke Kawai; Masao Nagasaki
Journal:  Heliyon       Date:  2018-05-22

Review 3.  Massive parallel sequencing in forensics: advantages, issues, technicalities, and prospects.

Authors:  David Ballard; Jakub Winkler-Galicki; Joanna Wesoły
Journal:  Int J Legal Med       Date:  2020-05-25       Impact factor: 2.686

4.  Sequence variations, flanking region mutations, and allele frequency at 31 autosomal STRs in the central Indian population by next generation sequencing (NGS).

Authors:  Hirak Ranjan Dash; Kamlesh Kaitholia; R K Kumawat; Anil Kumar Singh; Pankaj Shrivastava; Gyaneshwer Chaubey; Surajit Das
Journal:  Sci Rep       Date:  2021-12-01       Impact factor: 4.379

5.  Massively parallel sequencing of Cannabis sativa chloroplast hotspots for forensic typing.

Authors:  Madeline G Roman; Ryan Gutierrez; Rachel Houston
Journal:  J Cannabis Res       Date:  2022-03-17

6.  Isometric artifacts from polymerase chain reaction-massively parallel sequencing analysis of short tandem repeat loci: An emerging issue from a new technology?

Authors:  Irena Zupanič Pajnič; Carlo Previderè; Tomaž Zupanc; Martina Zanon; Paolo Fattorini
Journal:  Electrophoresis       Date:  2022-05-11       Impact factor: 3.595

7.  Sequence investigation of 34 forensic autosomal STRs with massively parallel sequencing.

Authors:  Suhua Zhang; Yong Niu; Yingnan Bian; Rixia Dong; Xiling Liu; Yun Bao; Chao Jin; Hancheng Zheng; Chengtao Li
Journal:  Sci Rep       Date:  2018-05-01       Impact factor: 4.379

8.  Identification of sequence polymorphisms at 58 STRs and 94 iiSNPs in a Tibetan population using massively parallel sequencing.

Authors:  Dan Peng; Yinming Zhang; Han Ren; Haixia Li; Ran Li; Xuefeng Shen; Nana Wang; Erwen Huang; Riga Wu; Hongyu Sun
Journal:  Sci Rep       Date:  2020-07-22       Impact factor: 4.379

9.  Sequencing of 231 forensic genetic markers using the MiSeq FGx™ forensic genomics system - an evaluation of the assay and software.

Authors:  Christian Hussing; Christina Huber; Rajmonda Bytyci; Helle S Mogensen; Niels Morling; Claus Børsting
Journal:  Forensic Sci Res       Date:  2018-04-09

10.  Inter-laboratory study on standardized MPS libraries: evaluation of performance, concordance, and sensitivity using mixtures and degraded DNA.

Authors:  Petra Müller; Christian Sell; Thorsten Hadrys; Johannes Hedman; Steffi Bredemeyer; Francois-Xavier Laurent; Lutz Roewer; Sabrina Achtruth; Maja Sidstedt; Titia Sijen; Marc Trimborn; Natalie Weiler; Sascha Willuweit; Ingo Bastisch; Walther Parson
Journal:  Int J Legal Med       Date:  2019-11-19       Impact factor: 2.686

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.