Literature DB >> 28936355

Theoretical and experimental study of the antifreeze protein AFP752, trehalose and dimethyl sulfoxide cryoprotection mechanism: correlation with cryopreserved cell viability.

Irena Kratochvílová1, Martin Golan1,2, Karel Pomeisl1, Jan Richter1, Silvia Sedláková1, Jakub Šebera1, Júlia Mičová1,3, Martin Falk4, Iva Falková4, David Řeha5,6, K Wade Elliott7, Krisztina Varga7, Shelby E Follett8, Daniel Šimek1.   

Abstract

In this work the physico-chemical properties of selected cryoprotectants (antifreeze protein TrxA-AFP752, trehalose and dimethyl sulfoxide) were correlated with their impact on the constitution of ice and influence on frozen/thawed cell viability. The freezing processes and states of investigated materials solutions were described and explained from a fundamental point of view using ab-initio modelling (molecular dynamics, DFT), Raman spectroscopy, Differential Scanning Calorimetry and X-Ray Diffraction. For the first time, in this work we correlated the microscopic view (modelling) with the description of the frozen solution states and put these results in the context of human skin fibroblast viability after freezing and thawing. DMSO and AFP had different impacts on their solution's freezing process but in both cases the ice crystallinity size was considerably reduced. DMSO and AFP treatment in different ways improved the viability of frozen/thawed cells.

Entities:  

Year:  2016        PMID: 28936355      PMCID: PMC5602551          DOI: 10.1039/C6RA25095E

Source DB:  PubMed          Journal:  RSC Adv        ISSN: 2046-2069            Impact factor:   3.361


  27 in total

1.  Antifreeze Proteins: Structures and Mechanisms of Function.

Authors:  Yin Yeh; Robert E. Feeney
Journal:  Chem Rev       Date:  1996-03-28       Impact factor: 60.622

2.  Domain fishing: a first step in protein comparative modelling.

Authors:  B Contreras-Moreira; P A Bates
Journal:  Bioinformatics       Date:  2002-08       Impact factor: 6.937

3.  Low concentrated hydroxyectoine solutions in presence of DPPC lipid bilayers: a computer simulation study.

Authors:  Jens Smiatek; Rakesh Kumar Harishchandra; Hans-Joachim Galla; Andreas Heuer
Journal:  Biophys Chem       Date:  2013-07-13       Impact factor: 2.352

4.  A molecular mechanism of solvent cryoprotection in aqueous DMSO solutions.

Authors:  Jestin B Mandumpal; Cara A Kreck; Ricardo L Mancera
Journal:  Phys Chem Chem Phys       Date:  2011-01-05       Impact factor: 3.676

Review 5.  The role of intracellular freezing in the death of cells cooled at supraoptimal rates.

Authors:  P Mazur
Journal:  Cryobiology       Date:  1977-06       Impact factor: 2.487

6.  Synthetic polymers enable non-vitreous cellular cryopreservation by reducing ice crystal growth during thawing.

Authors:  Robert C Deller; Manu Vatish; Daniel A Mitchell; Matthew I Gibson
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

7.  Two New Faces of Amifostine: Protector from DNA Damage in Normal Cells and Inhibitor of DNA Repair in Cancer Cells.

Authors:  Michal Hofer; Martin Falk; Denisa Komůrková; Iva Falková; Alena Bačíková; Bořivoj Klejdus; Eva Pagáčová; Lenka Štefančíková; Lenka Weiterová; Karel J Angelis; Stanislav Kozubek; Ladislav Dušek; Štefan Galbavý
Journal:  J Med Chem       Date:  2016-04-01       Impact factor: 7.446

8.  Crystal structure of an anhydrous form of trehalose: structure of water channels of trehalose polymorphism.

Authors:  H Nagase; N Ogawa; T Endo; M Shiro; H Ueda; M Sakurai
Journal:  J Phys Chem B       Date:  2008-07-08       Impact factor: 2.991

9.  Dual function of the hydration layer around an antifreeze protein revealed by atomistic molecular dynamics simulations.

Authors:  David R Nutt; Jeremy C Smith
Journal:  J Am Chem Soc       Date:  2008-09-06       Impact factor: 15.419

10.  Improved side-chain torsion potentials for the Amber ff99SB protein force field.

Authors:  Kresten Lindorff-Larsen; Stefano Piana; Kim Palmo; Paul Maragakis; John L Klepeis; Ron O Dror; David E Shaw
Journal:  Proteins       Date:  2010-06
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  11 in total

1.  An insect antifreeze protein from Anatolica polita enhances the cryoprotection of Xenopus laevis eggs and embryos.

Authors:  Predrag Jevtić; K Wade Elliott; Shelby E Watkins; Jonathan A Sreter; Katarina Jovic; Ian B Lehner; Paul W Baures; John G Tsavalas; Daniel L Levy; Krisztina Varga
Journal:  J Exp Biol       Date:  2022-02-15       Impact factor: 3.312

2.  Human serum albumin and chromatin condensation rescue ex vivo expanded γδ T cells from the effects of cryopreservation.

Authors:  Rebecca E Burnham; Donald Tope; Gianna Branella; Erich Williams; Christopher B Doering; H Trent Spencer
Journal:  Cryobiology       Date:  2021-01-21       Impact factor: 2.487

3.  A beetle antifreeze protein protects lactate dehydrogenase under freeze-thawing.

Authors:  Celeste Rodriguez; Seyed Sajjadi; Ravinder Abrol; Xin Wen
Journal:  Int J Biol Macromol       Date:  2019-06-19       Impact factor: 8.025

Review 4.  Methods of Cryoprotectant Preservation: Allogeneic Cellular Bone Grafts and Potential Effects.

Authors:  W Blake Martin; Renaud Sicard; Shabnam M Namin; Timothy Ganey
Journal:  Biomed Res Int       Date:  2019-10-16       Impact factor: 3.411

5.  Lipid Remodeling Confers Osmotic Stress Tolerance to Embryogenic Cells during Cryopreservation.

Authors:  Liang Lin; Junchao Ma; Qin Ai; Hugh W Pritchard; Weiqi Li; Hongying Chen
Journal:  Int J Mol Sci       Date:  2021-02-22       Impact factor: 5.923

6.  DeepFoci: Deep learning-based algorithm for fast automatic analysis of DNA double-strand break ionizing radiation-induced foci.

Authors:  Tomas Vicar; Jaromir Gumulec; Radim Kolar; Olga Kopecna; Eva Pagacova; Iva Falkova; Martin Falk
Journal:  Comput Struct Biotechnol J       Date:  2021-11-18       Impact factor: 7.271

7.  AFM Monitoring the Influence of Selected Cryoprotectants on Regeneration of Cryopreserved Cells Mechanical Properties.

Authors:  Martin Golan; Sarka Jelinkova; Irena Kratochvílová; Petr Skládal; Martin Pešl; Vladimír Rotrekl; Jan Pribyl
Journal:  Front Physiol       Date:  2018-06-29       Impact factor: 4.566

8.  Chromatin architecture changes and DNA replication fork collapse are critical features in cryopreserved cells that are differentially controlled by cryoprotectants.

Authors:  Martin Falk; Iva Falková; Olga Kopečná; Alena Bačíková; Eva Pagáčová; Daniel Šimek; Martin Golan; Stanislav Kozubek; Michaela Pekarová; Shelby E Follett; Bořivoj Klejdus; K Wade Elliott; Krisztina Varga; Olga Teplá; Irena Kratochvílová
Journal:  Sci Rep       Date:  2018-10-02       Impact factor: 4.379

9.  Challenges and Contradictions of Metal Nano-Particle Applications for Radio-Sensitivity Enhancement in Cancer Therapy.

Authors:  Eva Pagáčová; Lenka Štefančíková; Franz Schmidt-Kaler; Georg Hildenbrand; Tomáš Vičar; Daniel Depeš; Jin-Ho Lee; Felix Bestvater; Sandrine Lacombe; Erika Porcel; Stéphane Roux; Frederik Wenz; Olga Kopečná; Iva Falková; Michael Hausmann; Martin Falk
Journal:  Int J Mol Sci       Date:  2019-01-30       Impact factor: 5.923

10.  Red Blood Cell Cryopreservation with Minimal Post-Thaw Lysis Enabled by a Synergistic Combination of a Cryoprotecting Polyampholyte with DMSO/Trehalose.

Authors:  Alex Murray; Thomas R Congdon; Ruben M F Tomás; Peter Kilbride; Matthew I Gibson
Journal:  Biomacromolecules       Date:  2021-06-07       Impact factor: 6.988

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