Literature DB >> 28936128

Guarding against Spurious Discoveries in High Dimensions.

Jianqing Fan1, Wen-Xin Zhou1.   

Abstract

Many data-mining and statistical machine learning algorithms have been developed to select a subset of covariates to associate with a response variable. Spurious discoveries can easily arise in high-dimensional data analysis due to enormous possibilities of such selections. How can we know statistically our discoveries better than those by chance? In this paper, we define a measure of goodness of spurious fit, which shows how good a response variable can be fitted by an optimally selected subset of covariates under the null model, and propose a simple and effective LAMM algorithm to compute it. It coincides with the maximum spurious correlation for linear models and can be regarded as a generalized maximum spurious correlation. We derive the asymptotic distribution of such goodness of spurious fit for generalized linear models and L1-regression. Such an asymptotic distribution depends on the sample size, ambient dimension, the number of variables used in the fit, and the covariance information. It can be consistently estimated by multiplier bootstrapping and used as a benchmark to guard against spurious discoveries. It can also be applied to model selection, which considers only candidate models with goodness of fits better than those by spurious fits. The theory and method are convincingly illustrated by simulated examples and an application to the binary outcomes from German Neuroblastoma Trials.

Entities:  

Keywords:  Bootstrap; Gaussian approximation; generalized linear models; model selection; spurious correlation

Year:  2016        PMID: 28936128      PMCID: PMC5603346     

Source DB:  PubMed          Journal:  J Mach Learn Res        ISSN: 1532-4435            Impact factor:   3.654


  6 in total

1.  The International HapMap Project Web site.

Authors:  Gudmundur A Thorisson; Albert V Smith; Lalitha Krishnan; Lincoln D Stein
Journal:  Genome Res       Date:  2005-11       Impact factor: 9.043

2.  Variance estimation using refitted cross-validation in ultrahigh dimensional regression.

Authors:  Jianqing Fan; Shaojun Guo; Ning Hao
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2012-01-01       Impact factor: 4.488

3.  The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Authors:  Leming Shi; Gregory Campbell; Wendell D Jones; Fabien Campagne; Zhining Wen; Stephen J Walker; Zhenqiang Su; Tzu-Ming Chu; Federico M Goodsaid; Lajos Pusztai; John D Shaughnessy; André Oberthuer; Russell S Thomas; Richard S Paules; Mark Fielden; Bart Barlogie; Weijie Chen; Pan Du; Matthias Fischer; Cesare Furlanello; Brandon D Gallas; Xijin Ge; Dalila B Megherbi; W Fraser Symmans; May D Wang; John Zhang; Hans Bitter; Benedikt Brors; Pierre R Bushel; Max Bylesjo; Minjun Chen; Jie Cheng; Jing Cheng; Jeff Chou; Timothy S Davison; Mauro Delorenzi; Youping Deng; Viswanath Devanarayan; David J Dix; Joaquin Dopazo; Kevin C Dorff; Fathi Elloumi; Jianqing Fan; Shicai Fan; Xiaohui Fan; Hong Fang; Nina Gonzaludo; Kenneth R Hess; Huixiao Hong; Jun Huan; Rafael A Irizarry; Richard Judson; Dilafruz Juraeva; Samir Lababidi; Christophe G Lambert; Li Li; Yanen Li; Zhen Li; Simon M Lin; Guozhen Liu; Edward K Lobenhofer; Jun Luo; Wen Luo; Matthew N McCall; Yuri Nikolsky; Gene A Pennello; Roger G Perkins; Reena Philip; Vlad Popovici; Nathan D Price; Feng Qian; Andreas Scherer; Tieliu Shi; Weiwei Shi; Jaeyun Sung; Danielle Thierry-Mieg; Jean Thierry-Mieg; Venkata Thodima; Johan Trygg; Lakshmi Vishnuvajjala; Sue Jane Wang; Jianping Wu; Yichao Wu; Qian Xie; Waleed A Yousef; Liang Zhang; Xuegong Zhang; Sheng Zhong; Yiming Zhou; Sheng Zhu; Dhivya Arasappan; Wenjun Bao; Anne Bergstrom Lucas; Frank Berthold; Richard J Brennan; Andreas Buness; Jennifer G Catalano; Chang Chang; Rong Chen; Yiyu Cheng; Jian Cui; Wendy Czika; Francesca Demichelis; Xutao Deng; Damir Dosymbekov; Roland Eils; Yang Feng; Jennifer Fostel; Stephanie Fulmer-Smentek; James C Fuscoe; Laurent Gatto; Weigong Ge; Darlene R Goldstein; Li Guo; Donald N Halbert; Jing Han; Stephen C Harris; Christos Hatzis; Damir Herman; Jianping Huang; Roderick V Jensen; Rui Jiang; Charles D Johnson; Giuseppe Jurman; Yvonne Kahlert; Sadik A Khuder; Matthias Kohl; Jianying Li; Li Li; Menglong Li; Quan-Zhen Li; Shao Li; Zhiguang Li; Jie Liu; Ying Liu; Zhichao Liu; Lu Meng; Manuel Madera; Francisco Martinez-Murillo; Ignacio Medina; Joseph Meehan; Kelci Miclaus; Richard A Moffitt; David Montaner; Piali Mukherjee; George J Mulligan; Padraic Neville; Tatiana Nikolskaya; Baitang Ning; Grier P Page; Joel Parker; R Mitchell Parry; Xuejun Peng; Ron L Peterson; John H Phan; Brian Quanz; Yi Ren; Samantha Riccadonna; Alan H Roter; Frank W Samuelson; Martin M Schumacher; Joseph D Shambaugh; Qiang Shi; Richard Shippy; Shengzhu Si; Aaron Smalter; Christos Sotiriou; Mat Soukup; Frank Staedtler; Guido Steiner; Todd H Stokes; Qinglan Sun; Pei-Yi Tan; Rong Tang; Zivana Tezak; Brett Thorn; Marina Tsyganova; Yaron Turpaz; Silvia C Vega; Roberto Visintainer; Juergen von Frese; Charles Wang; Eric Wang; Junwei Wang; Wei Wang; Frank Westermann; James C Willey; Matthew Woods; Shujian Wu; Nianqing Xiao; Joshua Xu; Lei Xu; Lun Yang; Xiao Zeng; Jialu Zhang; Li Zhang; Min Zhang; Chen Zhao; Raj K Puri; Uwe Scherf; Weida Tong; Russell D Wolfinger
Journal:  Nat Biotechnol       Date:  2010-07-30       Impact factor: 54.908

4.  Distributions of Angles in Random Packing on Spheres.

Authors:  Tony Cai; Jianqing Fan; Tiefeng Jiang
Journal:  J Mach Learn Res       Date:  2013-01       Impact factor: 3.654

5.  Customized oligonucleotide microarray gene expression-based classification of neuroblastoma patients outperforms current clinical risk stratification.

Authors:  André Oberthuer; Frank Berthold; Patrick Warnat; Barbara Hero; Yvonne Kahlert; Rüdiger Spitz; Karen Ernestus; Rainer König; Stefan Haas; Roland Eils; Manfred Schwab; Benedikt Brors; Frank Westermann; Matthias Fischer
Journal:  J Clin Oncol       Date:  2006-11-01       Impact factor: 44.544

6.  One-step Sparse Estimates in Nonconcave Penalized Likelihood Models.

Authors:  Hui Zou; Runze Li
Journal:  Ann Stat       Date:  2008-08-01       Impact factor: 4.028

  6 in total

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