| Literature DB >> 28935853 |
Ying Yu1, Ying Chen2, Feng-Ling Wang1, Jing Sun3, Hai-Jun Li2, Jia-Ming Liu4.
Abstract
BACKGROUND This study aimed to analyze and explore the relationship between the cytokines IL-4 and IL-10 in relation to gene polymorphism and their respective effects on the susceptibility to virus-induced encephalitis. MATERIAL AND METHODS From January 2012 to June 2013, 112 patients with virus-induced encephalitis (the case group and 109 healthy individuals (the control group) were recruited for the purposes of this study. The functional variations that IL-4 and IL-10 genes exhibit were detected through the use of a function analysis and selection tool for single-nucleotide polymorphisms (FASTSNP). The genotypes of IL-4 were rs2227283 and IL-4 rs2227288, and the genotypes of IL-10 were rs1800871 and IL-10 rs1800872. These genotypes were respectively assessed using direct sequencing. RESULTS IL-4 rs2227283 and IL-10 rs1800871 have no correlation in with risk of virus-induced encephalitis (both P>0.05) GA and AA genotypes were related to IL-4 rs2227288 and GT, while TT and GT + TT genotypes were related to IL-10 rs1800872. These were highlighted as being risk factors in virus-induced encephalitis (all P<0.05). However, the duration of fever, white blood cell (WBC) count, C-reactive protein (CRP), neutrophils, and lymphocytes and monocytes of virus-induced encephalitis patients with IL-4 rs2227288 and IL-10 rs1800872 all displayed significant differences (all P<0.05). Frequencies of GAGT and CAGT haplotypes were evaluated and deemed to be of statistical significance and subsequently were highlighted as being risk factors in virus-induced encephalitis (all P<0.05). CONCLUSIONS IL-4 rs2227288 and IL-10 rs1800872 may contribute to an increased risk for virus-induced encephalitis. Through use of direct sequencing, we showed that genotypes of IL-4 rs2227288 and IL-10 rs1800872 may have particular host susceptibility to virus-induced encephalitis.Entities:
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Year: 2017 PMID: 28935853 PMCID: PMC5683680 DOI: 10.12659/msm.904364
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Primer sequences for IL-4 rs2243283/rs2243288 and IL-10 rs1800871/rs1800872.
| Gene | SNP | Primer sequence |
|---|---|---|
| IL-4 | rs2243283 | Forward 5′-GGCTGAAAGGGGGAAAGCAT-3′ |
| Reverse 5′-CCTTGCCGCCAGTCTTTCAT-3′ | ||
| rs2243288 | Forward 5′-CAGTCATGCAGAAGGCCCAGTA-3′ | |
| Reverse 5′-GGCCAGCAGGTTTTGCCTATTT-3′ | ||
| IL-10 | rs1800871 | Forward 5′-TCCCAAGCAGCCCTTCCATT-3′ |
| rsl800872 | Reverse 5′-CCAAATTCTCAGTTGGCACTGG-3′ |
SNP – single nucleotide polymorphism; F – forward; R – reverse.
Baseline characteristics of subjects between the case and control groups.
| Case group | Control group | t/χ2 | ||
|---|---|---|---|---|
| Age | 39.89±15.98 | 40.70±14.52 | 0.059 | 0.953 |
| Gender | 0.259 | 0.611 | ||
| Male | 63 | 65 | ||
| Female | 49 | 44 | ||
| WBC count (ρ/mg·L−1) | 6.95±0.88 | 4.55±0.83 | 20.845 | <0.001 |
| CRP (109/L) | 9.12±0.49 | 5.05±0.21 | 79.870 | <0.001 |
| Neutrophils (×109) | 9.38±2.22 | 3.88±1.97 | 19.462 | <0.001 |
| Lymphocyte (×109) | 5.49±1.04 | 2.37±0.62 | 26.997 | <0.001 |
| Monocyte (×109) | 3.70±0.33 | 0.58±0.15 | 90.064 | <0.001 |
WBC – white blood cell; CRP – C-reactive protein.
The observed and expected values of the frequencies of IL-4 rs2243283/rs2243288 and IL-10 rs1800871/rs1800872 in the case and control groups.
| SNP | Genotype | Case group | Control group | ||||||
|---|---|---|---|---|---|---|---|---|---|
| E | O | χ2 | E | O | χ2 | ||||
| IL-4 rs2243283 | 1.613 | 0.204 | 3.033 | 0.082 | |||||
| CG | 34 | 31 | 40 | 35 | |||||
| CC | 56 | 62 | 52 | 61 | |||||
| GG | 22 | 19 | 17 | 13 | |||||
| IL-4 rs2243288 | 0.033 | 0.856 | 2.248 | 0.134 | |||||
| GG | 27 | 27 | 50 | 53 | |||||
| GA | 56 | 55 | 48 | 41 | |||||
| AA | 29 | 30 | 11 | 15 | |||||
| IL-10 rs1800871 | 0.447 | 0.504 | 3.499 | 0.061 | |||||
| GG | 20 | 18 | 24 | 19 | |||||
| GA | 54 | 58 | 54 | 64 | |||||
| AA | 38 | 36 | 31 | 26 | |||||
| IL-10 rs1800872 | 0.557 | 0.456 | 2.133 | 0.144 | |||||
| GG | 8 | 7 | 15 | 19 | |||||
| GT | 45 | 48 | 51 | 44 | |||||
| TT | 59 | 57 | 43 | 46 | |||||
SNP – single nucleotide polymorphism; E – expected values; O – observed values.
Distributions of genotype and allele frequencies of IL-4 rs2243283/rs2243288 and IL-10 rs1800871/rs1800872 in the case and control groups.
| SNP | Genotype | Case group (n=112) | Control group (n=109) | χ2 | OR (95%CI) | |
|---|---|---|---|---|---|---|
| IL-4 rs2243283 | CC | 31 (27.68) | 35 (32.11) | Ref. | ||
| CG | 62 (55.36) | 61 (55.96) | 0.203 | 1.148 (0.630~2.089) | 0.652 | |
| GG | 19 (16.96) | 13 (11.93) | 1.327 | 1.650 (0.702~3.882) | 0.249 | |
| CG + GG | 81 (72.32) | 74 (67.89) | 0.518 | 1.236 (0.693~2.201) | 0.472 | |
| C | 124 (55.36) | 131 (60.09) | Ref. | |||
| G | 100 (44.64) | 87 (39.91) | 1.015 | 1.214 (0.832~1.772) | 0.314 | |
| IL-4 rs2243288 | GG | 27 (24.11) | 53 (48.62) | Ref. | ||
| GA | 55 (49.11) | 41 (37.62) | 9.719 | 2.633 (1.423~4.872) | 0.002 | |
| AA | 30 (26.79) | 15 (13.76) | 12.579 | 3.926 (1.810~8.514) | 0.001 | |
| GA + AA | 85 (75.89) | 56 (51.38) | 14.376 | 2.980 (1.679~5.286) | < 0.001 | |
| G | 109 (48.66) | 147 (67.43) | Ref. | |||
| A | 115 (51.34) | 71 (32.57) | 15.971 | 2.184 (1.485~3.213) | < 0.001 | |
| IL-10 rs1800871 | GG | 18 (16.07) | 19 (17.43) | Ref. | ||
| GA | 58 (51.93) | 64 (58.72) | 0.014 | 0.957 (0.458~1.998) | 0.906 | |
| AA | 36 (32.61) | 26 (23.85) | 0.829 | 1.462 (0.645~3.3.14) | 0.363 | |
| GA + AA | 94 (83.93) | 90 (82.57) | 0.073 | 1.103 (0.543~2.235) | 0.787 | |
| G | 94 (41.96) | 102 (46.79) | Ref. | |||
| A | 130 (58.04) | 116 (53.21) | 1.042 | 1.216 (0.835~1.771) | 0.307 | |
| IL-10 rs1800872 | GG | 7 (6.25) | 19 (17.43) | Ref. | 1 (Ref.) | |
| GT | 48 (42.86) | 44 (40.37) | 5.194 | 2.961 (1.135~7.722) | 0.023 | |
| TT | 57 (50.89) | 46 (42.20) | 6.706 | 3.363 (1.301~8.696) | 0.010 | |
| GT + TT | 105 (93.75) | 90 (82.57) | 6.788 | 3.202 (1.287~7.969) | 0.010 | |
| G | 62 (27.68) | 82 (37.61) | Ref. | 1 (Ref.) | ||
| T | 162 (72.32) | 136 (62.39) | 4.966 | 1.575 (1.055~2.353) | 0.026 |
SNP – single nucleotide polymorphism; OR – odd ratio; CI – confidence interval; Ref. – reference.
Comparison of IL-4 and IL-10 genes with the clinical features in the case group.
| SNP | Genotype | Gender | Age | Duration of fever | CRP (109/L) | WBC count (ρ/mg·L-1) | Neutrophils | Lymphocyte | Monocyte | |
|---|---|---|---|---|---|---|---|---|---|---|
| Male | Female | |||||||||
| IL-4 rs2243283 | CG | 18 | 13 | 41.10± 17.09 | 2.57± 0.41 | 9.03± 0.50 | 6.80± 0.93 | 8.95± 2.14 | 5.35± 1.03 | 3.64± 0.32 |
| CC | 33 | 29 | 38.39± 15.67 | 2.68± 0.43 | 9.18± 0.49 | 7.04± 0.87 | 9.65± 2.29 | 5.59± 1.07 | 3.74± 0.35 | |
| GG | 12 | 7 | 42.84± 15.38 | 2.59± 0.38 | 9.06± 0.46 | 6.87± 0.81 | 9.21± 2.07 | 5.40± 0.97 | 3.67± 0.31 | |
| IL-4 rs2243288 | GG | 14 | 13 | 37.37± 12.64 | 2.12± 0.26 | 8.51± 0.25 | 5.91± 0.67 | 6.52± 1.14 | 4.12± 0.58 | 3.29± 0.12 |
| GA | 32 | 23 | 41.78± 15.94 | 2.61± 0.13* | 9.09± 0.20* | 6.88± 0.23* | 9.28± 0.73* | 5.51± 0.36* | 3.67± 0.3* | |
| AA | 17 | 13 | 38.70± 18.63 | 3.14± 0.26* | 9.71± 0.25* | 7.99± 0.56* | 12.14± 1.07* | 6.69± 0.58* | 4.14± 0.16* | |
| IL-10 rs1800871 | GG | 9 | 9 | 42.11± 16.33 | 2.74± 0.32 | 9.24± 0.41 | 7.20± 0.67 | 10.02± 1.91 | 5.72± 0.79 | 3.79± 0.30 |
| GA | 33 | 27 | 38.21± 16.05 | 2.68± 0.45 | 9.17± 0.52 | 7.05± 0.92 | 9.64± 2.33 | 5.63± 1.09 | 3.75± 0.35 | |
| AA | 21 | 15 | 41.5± 15.84 | 2.51± 0.39 | 9.07± 0.44 | 6.86± 0.78 | 9.17± 2.04 | 5.38± 0.92 | 3.67± 0.29 | |
| IL-10 rs1800872 | GG | 4 | 3 | 37.43± 17.24 | 1.75± 0.20 | 8.15± 0.15 | 4.97± 0.62 | 4.97± 1.03 | 3.30± 0.45 | 3.13± 0.07 |
| GT | 32 | 16 | 41.21± 15.51 | 2.40± 0.15# | 8.80± 0.19# | 6.51± 0.28# | 8.03± 0.96# | 4.87± 0.46# | 3.47± 0.13# | |
| TT | 27 | 30 | 39.09± 16.42 | 2.94± 0.29# | 9.50± 0.30# | 7.56± 0.61# | 11.06± 1.40# | 6.28± 0.61# | 3.97± 0.23# | |
SNP – single nucleotide polymorphism; CRP – C-reactive protein; WBC – white blood cell.
Haplotype analysis of rs2243283, rs2243288, rs1800871 and rs1800872 in the case and control groups.
| Haplotype | Case group (n=112) | Control group (n=109) | OR | 95% CI | ||||
|---|---|---|---|---|---|---|---|---|
| rs2243283 | rs2243288 | rs1800871 | rs1800872 | |||||
| C | A | A | T | 16 (0.149) | 8 (0.071) | 0.031 | 1.997 | 1.056~3.777 |
| C | G | A | G | 11 (0.100) | 13 (0.119) | 0.269 | 0.713 | 0.390~1.302 |
| G | A | G | T | 6 (0.051) | 1 (0.014) | 0.049 | 3.409 | 0.933~12.462 |
| C | G | G | G | 8 (0.073) | 6 (0.056) | 0.728 | 1.146 | 0.532~2.469 |
| G | G | A | G | 8 (0.073) | 4 (0.041) | 0.259 | 1.619 | 0.697~3.760 |
| G | A | A | T | 13 (0.112) | 5 (0.045) | 0.025 | 2.350 | 1.091~5.062 |
| G | G | G | T | 5 (0.042) | 8 (0.069) | 0.112 | 0.511 | 0.220~1.186 |
| C | G | A | T | 16 (0.146) | 19 (0.171) | 0.18 | 0.703 | 0.419~1.179 |
| C | A | G | T | 23 (0.202) | 7 (0.063) | <0.001 | 3.296 | 1.738~6.253 |
| C | G | A | G | 11 (0.100) | 13 (0.102) | 0.269 | 0.713 | 0.390~1.302 |
| C | G | G | T | 2 (0.022) | 16 (0.143) | <0.001 | 0.115 | 0.044~0.305 |
OR – odd ratio; CI – confidence interval.