Literature DB >> 28933646

Visualizing tRNA-dependent mistranslation in human cells.

Jeremy T Lant1, Matthew D Berg1, Daniel H W Sze1, Kyle S Hoffman1, Ibukunoluwa C Akinpelu1, Matthew A Turk1, Ilka U Heinemann1, Martin L Duennwald2, Christopher J Brandl1, Patrick O'Donoghue1,3.   

Abstract

High-fidelity translation and a strictly accurate proteome were originally assumed as essential to life and cellular viability. Yet recent studies in bacteria and eukaryotic model organisms suggest that proteome-wide mistranslation can provide selective advantages and is tolerated in the cell at higher levels than previously thought (one error in 6.9 × 10-4 in yeast) with a limited impact on phenotype. Previously, we selected a tRNAPro containing a single mutation that induces mistranslation with alanine at proline codons in yeast. Yeast tolerate the mistranslation by inducing a heat-shock response and through the action of the proteasome. Here we found a homologous human tRNAPro (G3:U70) mutant that is not aminoacylated with proline, but is an efficient alanine acceptor. In live human cells, we visualized mistranslation using a green fluorescent protein reporter that fluoresces in response to mistranslation at proline codons. In agreement with measurements in yeast, quantitation based on the GFP reporter suggested a mistranslation rate of up to 2-5% in HEK 293 cells. Our findings suggest a stress-dependent phenomenon where mistranslation levels increased during nutrient starvation. Human cells did not mount a detectable heat-shock response and tolerated this level of mistranslation without apparent impact on cell viability. Because humans encode ∼600 tRNA genes and the natural population has greater tRNA sequence diversity than previously appreciated, our data also demonstrate a cell-based screen with the potential to elucidate mutations in tRNAs that may contribute to or alleviate disease.

Entities:  

Keywords:  Aminoacyl-tRNA synthetase; cell stress; genetic code; tRNA; translation

Mesh:

Substances:

Year:  2017        PMID: 28933646      PMCID: PMC6103679          DOI: 10.1080/15476286.2017.1379645

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  48 in total

1.  Global effects of mistranslation from an editing defect in mammalian cells.

Authors:  Leslie A Nangle; Candace M Motta; Paul Schimmel
Journal:  Chem Biol       Date:  2006-10

2.  Aminoglycoside antibiotics mediate context-dependent suppression of termination codons in a mammalian translation system.

Authors:  M Manuvakhova; K Keeling; D M Bedwell
Journal:  RNA       Date:  2000-07       Impact factor: 4.942

3.  Evolutionary Gain of Alanine Mischarging to Noncognate tRNAs with a G4:U69 Base Pair.

Authors:  Litao Sun; Ana Cristina Gomes; Weiwei He; Huihao Zhou; Xiaoyun Wang; David W Pan; Paul Schimmel; Tao Pan; Xiang-Lei Yang
Journal:  J Am Chem Soc       Date:  2016-09-26       Impact factor: 15.419

4.  Human cytoplasmic ProX edits mischarged tRNAPro with amino acid but not tRNA specificity.

Authors:  Liang-Liang Ruan; Xiao-Long Zhou; Min Tan; En-Duo Wang
Journal:  Biochem J       Date:  2013-02-15       Impact factor: 3.857

Review 5.  Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology.

Authors:  Jiqiang Ling; Patrick O'Donoghue; Dieter Söll
Journal:  Nat Rev Microbiol       Date:  2015-09-22       Impact factor: 60.633

6.  Protein aggregation caused by aminoglycoside action is prevented by a hydrogen peroxide scavenger.

Authors:  Jiqiang Ling; Chris Cho; Li-Tao Guo; Hans R Aerni; Jesse Rinehart; Dieter Söll
Journal:  Mol Cell       Date:  2012-10-30       Impact factor: 17.970

7.  Exclusive use of trans-editing domains prevents proline mistranslation.

Authors:  Oscar Vargas-Rodriguez; Karin Musier-Forsyth
Journal:  J Biol Chem       Date:  2013-04-05       Impact factor: 5.157

8.  Diversity of tRNA genes in eukaryotes.

Authors:  Jeffrey M Goodenbour; Tao Pan
Journal:  Nucleic Acids Res       Date:  2006-11-06       Impact factor: 16.971

9.  Editing of misaminoacylated tRNA controls the sensitivity of amino acid stress responses in Saccharomyces cerevisiae.

Authors:  Kyle Mohler; Rebecca Mann; Tammy J Bullwinkle; Kyle Hopkins; Lin Hwang; Noah M Reynolds; Brandon Gassaway; Hans-Rudolf Aerni; Jesse Rinehart; Michael Polymenis; Kym Faull; Michael Ibba
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

10.  Genetic selection for mistranslation rescues a defective co-chaperone in yeast.

Authors:  Kyle S Hoffman; Matthew D Berg; Brian H Shilton; Christopher J Brandl; Patrick O'Donoghue
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

View more
  12 in total

1.  Transfer RNA function and evolution.

Authors:  Patrick O'Donoghue; Jiqiang Ling; Dieter Söll
Journal:  RNA Biol       Date:  2018       Impact factor: 4.652

Review 2.  Pathways to disease from natural variations in human cytoplasmic tRNAs.

Authors:  Jeremy T Lant; Matthew D Berg; Ilka U Heinemann; Christopher J Brandl; Patrick O'Donoghue
Journal:  J Biol Chem       Date:  2019-01-14       Impact factor: 5.157

3.  Regulating Expression of Mistranslating tRNAs by Readthrough RNA Polymerase II Transcription.

Authors:  Matthew D Berg; Joshua R Isaacson; Ecaterina Cozma; Julie Genereaux; Patrick Lajoie; Judit Villén; Christopher J Brandl
Journal:  ACS Synth Biol       Date:  2021-11-02       Impact factor: 5.110

Review 4.  The Role of 3' to 5' Reverse RNA Polymerization in tRNA Fidelity and Repair.

Authors:  Allan W Chen; Malithi I Jayasinghe; Christina Z Chung; Bhalchandra S Rao; Rosan Kenana; Ilka U Heinemann; Jane E Jackman
Journal:  Genes (Basel)       Date:  2019-03-26       Impact factor: 4.096

5.  Targeted sequencing reveals expanded genetic diversity of human transfer RNAs.

Authors:  Matthew D Berg; Daniel J Giguere; Jacqueline S Dron; Jeremy T Lant; Julie Genereaux; Calwing Liao; Jian Wang; John F Robinson; Gregory B Gloor; Robert A Hegele; Patrick O'Donoghue; Christopher J Brandl
Journal:  RNA Biol       Date:  2019-08-13       Impact factor: 4.652

6.  Modulating Mistranslation Potential of tRNASer in Saccharomyces cerevisiae.

Authors:  Matthew D Berg; Yanrui Zhu; Julie Genereaux; Bianca Y Ruiz; Ricard A Rodriguez-Mias; Tyler Allan; Alexander Bahcheli; Judit Villén; Christopher J Brandl
Journal:  Genetics       Date:  2019-09-04       Impact factor: 4.562

7.  Transfer RNAs: diversity in form and function.

Authors:  Matthew D Berg; Christopher J Brandl
Journal:  RNA Biol       Date:  2020-09-09       Impact factor: 4.652

8.  Formation and persistence of polyglutamine aggregates in mistranslating cells.

Authors:  Jeremy T Lant; Rashmi Kiri; Martin L Duennwald; Patrick O'Donoghue
Journal:  Nucleic Acids Res       Date:  2021-11-18       Impact factor: 16.971

9.  Characterization and phylogenetic analysis of the complete mitochondrial genome of the medicinal fungus Laetiporus sulphureus.

Authors:  Qiang Li; Mei Yang; Cheng Chen; Chuan Xiong; Xin Jin; Zhigang Pu; Wenli Huang
Journal:  Sci Rep       Date:  2018-06-14       Impact factor: 4.379

10.  Chemical-Genetic Interactions with the Proline Analog L-Azetidine-2-Carboxylic Acid in Saccharomyces cerevisiae.

Authors:  Matthew D Berg; Yanrui Zhu; Joshua Isaacson; Julie Genereaux; Raphaël Loll-Krippleber; Grant W Brown; Christopher J Brandl
Journal:  G3 (Bethesda)       Date:  2020-12-03       Impact factor: 3.154

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.