Literature DB >> 28932483

Crystal structure and DFT study of bis-{(S)-2-[(2-hy-droxy-benzyl)-amino]-4-methyl-penta-noato-κ2N,O}(1,10-phenanthroline-κ2N,N')nickel(II).

Md Serajul Haque Faizi1, Necmi Dege2, Sergey Malinkin3.   

Abstract

In the title compound, [Ni(C13H18NO3)2(C12H8N2)], the n class="Chemical">NiII cation shows a distorted octa-hedral coordination environment. It is formed by two N atoms from the phenanthroline ligand, as well as two N and two O atoms belonging to two 2-[(2-hy-droxy-benz-yl)amino]-4-methyl-penta-noate ligands. Complex mol-ecules are connected into layers propagating along the ab plane via hydrogen bonds formed by O atoms of carboxyl-ate and phenoxide groups, which are further connected into a three-dimensional motif.

Entities:  

Keywords:  C—H⋯π inter­actions; amine; crystal structure; hydrogen bonding; leucine; nickel(II); phenanthroline; salicyl­aldehyde

Year:  2017        PMID: 28932483      PMCID: PMC5588589          DOI: 10.1107/S2056989017012014

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The design and synthesis of metal complexes have attracted considerable attention for their potential applications in catalysis, magnetism, materials science and pharmaceutical chemistry (Che & Siu, 2010 ▸). Mononuclear ethyl­enedi­aminedi­acetate complexes can be used to bind and cleave DNA under physiological conditions (An et al., 2006 ▸) and binuclear complexes containing n class="Chemical">bipyridyl or phenanthroline units in their structure show anti­viral activity, as well as inhibition of proviral DNA synthesis (Rajendiran et al., 2007 ▸). On the other hand, using bifunctional ligands that are capable of simultaneously coordinating to a metal centre and providing hydrogen bonding gives important experimental data for a better understanding of the key tools in crystal engineering (Burrows, 2004 ▸). Metal complexes of 1,10-phenanthroline (phen) and its derivatives are of increasing inter­est because of their versatile roles in many fields, such as analytical chemistry (Chalk & Tyson, 1994 ▸), catalysis (Samnani et al., 1996 ▸), electrochemical polymerization (Bachas et al., 1997 ▸) and biochemistry (Sammes & Yahioglu, 1994 ▸). 1,10-Phenanthroline is a bidentate chelating ligand with notable coordination ability for transition metal cations. Over the last few decades, the complex formation of transition metal ions with amino acids has also been studied extensively (Auclair et al., 1984 ▸). Amino acid–metallic ion inter­actions are found to be responsible for enzymatic activity and the stability of protein structures (Dinelli et al., 2010 ▸). Nickel is also essential for the healthy life of animals since it is associated with several enzymes (Poellot et al., 1990 ▸) and plays a role in physiological processes as a cofactor in the absorption of iron from the intestine (Nielsen, 1980 ▸). Any change in its concentration leads to metabolic disorder (Kolodziej, 1994 ▸). With the discovery of the biological importance of nickel, it is essential to study its complex formation with amino acids in order to gain a better understanding of the functions of their complexes (Faizi & Sharkina, 2015 ▸). Therefore, we report here the preparation and the crystal structure of a nickel(II) complex with the formula: [Ni(C13H18NO3)2(C12H8N2)], (I).

Structural commentary

The complex mol­ecule of I, represented in Fig. 1 ▸, contains one crystallographically independent NiII cation, which is octahedrally coordinated by two mol­ecules of deprotonated 2-[(2-hy­droxy­benz­yl)amino]-4-methyl­penta­noic acid via their n class="Disease">N atoms and one of the carboxylate atoms each. The coordination environment is com­pleted by one bidentate phenanthroline ligand. The C—O bond lengths in the deprotonated carb­oxy­lic acid groups differ significantly [1.239 (2) and 1.292 (2) Å], which is typical for monodentate carboxyl­ate groups (Wörl et al., 2005a ▸,b ▸).
Figure 1

The mol­ecular structure of compound I, showing the atom labelling. Displacement ellipsoids are drawn at the 40% probability level.

The values of the Ni—O bond lengths are similar to those reported in the literature for octa­hedral carboxyl­ate nickel(II) complexes II–IV (see §5). However, the corresponding Ni—N separations of 2.101 (3)–2.149 (3) Å are somewhat shorter than found for III–IV and similar to that observed in II. Consequently, the slightly distorted octa­hedral coordination is stabilized by intra­molecular N1—H1A⋯O1 and N2—H2A⋯O2 hydrogen bonds between O atoms of n class="Chemical">phenoxide moieties and amino groups (Table 1 ▸ and Fig. 1 ▸) and a weak π–π inter­action between the phenanthroline ligand and the phenoxide unit [centroid(N4/C27–C30/C38)⋯centroid(C20–C25) = 3.530 (2) Å].
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯O6i 0.821.822.597 (5)158
O1—H1⋯O3ii 0.821.902.686 (5)161
N2—H2A⋯O20.982.132.856 (5)129
N1—H1A⋯O10.982.453.082 (5)122
C2—H2B⋯O3ii 0.932.563.187 (6)125
C9—H9A⋯O50.972.383.212 (6)143
C16—H16B⋯O40.972.313.140 (7)143
C27—H27⋯O40.932.583.094 (5)116
C36—H36⋯O50.932.623.132 (6)115

Symmetry codes: (i) ; (ii) .

Supra­molecular features

As shown in Fig. 2 ▸, mol­ecules of I are united into layers along the ab plane via hydrogen bonds formed between the O atoms of carboxyl­ate and n class="Chemical">phenoxide groups (Table 1 ▸). The layers are stacked via weak C—H⋯π inter­actions between the H atoms of phenanthroline ligands and phenoxide moieties [H32⋯centroid(C1–C6) = 3.390 (5) Å and H23⋯centroid(C1–C6) = 3.477 (3) Å] (Fig. 3 ▸).
Figure 2

A view of the O—H⋯O hydrogen bonds (dashed lines; see Table 1 ▸) in the crystal of compound I, forming layers that are parallel to the ab plane. All H atoms have been omitted for clarity.

Figure 3

A view along the b axis of the crystal packing of compound I. The C—H⋯π inter­actions are illustrated by dashed lines. All H atoms have been omitted for clarity.

DFT study

The mol­ecular structure used in the theoretical studies of the Ni complex was taken from the X-ray diffraction results, keeping all distances, angles and dihedral angles frozen. Single-point DFT calculations have been carried out using the scalar zeroth-order regular approximation Hamiltonian (Wüllen, 1998 ▸). Single-point ground-state calculations were carried out using the hybrid B3LYP functional as implemented in ORCA (Lee et al., 1988 ▸). The present calculation was performed using the additional approximation that the Coulomb integrals are approximated by sum of atom centred s, p, d functions, the auxiliary (or fitting) basis set (Yilmaz et al., 2006 ▸). This allows for efficient treatment of the Coulomb inter­actions and hence reduces calculation times. The Def2-TZVP main and Def2-TZVP/J auxiliary basis sets were used (Pantazis et al., 2008 ▸). The main basis set is of [5s3p2d] quality for Ni, (5s2p1d) for C, N and O, and (2s) for H (Weigend & Ahlrichs, 2005 ▸). The LUMO and HOMO orbital energy parameters are significantly accountable for the charge transfer, chemical reactivity and kinetic/thermodynamic stability of a mol­ecule. Metal complexes with a small energy gap (ΔE) between the HOMO and LUMO are more polarizable, thereby acting as soft mol­ecules with higher chemical reactivity. However, complexes with a large energy gap offer greater stability and low chemical reactivity compared to those with a small HOMO–LUMO energy gap. The DFT study of I revealed that the HOMO and HOMO-1 are localized on the N1, N2, O4, O5, O3, O6, C13 and C14 atoms of the amino acid ligand. In addition, the respective mol­ecular orbitals are also partially localized on the n class="Chemical">NiII cation, namely in the d orbital (Fig. 4 ▸). In contrast, LUMO and LUMO+1 are totally delocalized over the phenanthroline moiety. It could therefore be stated that the HOMO and LUMO are mainly composed of σ- and π-type orbitals, respectively, and that intra­molecular charge transfer occurs from the amino acid moiety to the phenanthroline ligand. The HOMO–LUMO gap of I was calculated to 0.04212 a.u. and the frontier mol­ecular orbital energies of I are also given in Fig. 4 ▸. A comparison of selected geometric data for I from calculated (DFT) and X-ray data is given in Table 2 ▸.
Figure 4

Electron distribution of the HOMO-1, HOMO, LUMO and LUMO+1 energy levels for I.

Table 2

Comparison of selected geometric data for I (Å, °) from calculated (DFT) and X-ray data

BondsX-rayB3LYP/6–311G(d,p)
Ni1—N32.101 (3)2.100
Ni1—N42.105 (3)2.105
Ni1—N12.141 (3)2.142
Ni1—N22.149 (3)2.149
Ni1—O52.044 (2)2.044
Ni1—O42.051 (3)2.051
O5—Ni1—O4101.77 (11)101.771
N3—Ni1—N2101.52 (15)101.510

Database survey

A search of the Cambridge Structural Database (CSD, Version 5.38, update February 2017; Groom et al., 2016 ▸) revealed the structures of three similar compounds, viz. (II) (IVIKOO; Ji et al., 2011 ▸), (III) (FATQAT; Ma et al., 2004 ▸) and (IV) (YOWKEA; Skoulika et al., 1995 ▸); all three nickel(II) complexes have similar n class="Chemical">N4O2 coordination environments formed by amino­carboxyl­ate and phenanthroline ligands.

Synthesis and crystallization

For the preparation of 2-[(2-hy­droxy­benz­yl)amino]-4-methyl­penta­noic acid (HAMA), n class="Chemical">l-leucine (1.00 g, 6.71 mmol) and LiOH·H2O (0.284 g, 6.77 mmol) in anhydrous methanol (30 ml) were stirred for 30 min to dissolve. A methano­lic solution of salicyl­aldehyde (1.44 g, 6.72 mmol) was added dropwise to the above solution. The solution was stirred for 1 h and then treated with sodium borohydride (0.248 g, 6.71 mmol) with constant stirring. The solvent was evaporated and the resulting sticky mass was dissolved in water. A cloudy solution was obtained, which was then acidified with dilute HCl. By maintaining the pH of the solution in the range 5–7 the ligand precipitated as a colourless solid. The solid was filtered off, washed thoroughly with water and finally dried inside a vacuum desiccator (yield 2.08 g, 85%). For the preparation of the title compound, HAMA (0.500 g, 1.43 mmol) was deprotonated with n class="Chemical">LiOH·H2O (0.060 g, 1.44 mmol) in anhydrous methanol (25 ml), which resulted in a clear colourless solution after 30 min. A methano­lic solution of Ni(NO3)2·6H2O (0.17 g, 0.71 mmol) was added dropwise to the ligand solution with stirring. The colour of the solution changed to green immediately. Phenanthroline (0.13 g, 0.71 mmol) was then added and the reaction mixture was stirred at room temperature for 16 h. The solution was evaporated to dryness with a rotary evaporator. Blue block-shaped crystals, suitable for single-crystal X-ray analysis, were obtained by slow diffusion of diethyl ether into a methano­lic solution of the crude solid over a period of 2–3 d. The crystals were filtered off and washed with diethyl ether (yield 74%).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. The N—H hydrogens were located in a difference Fourier map and refined without constraints. The O—H n class="Chemical">hydrogens were also located in a difference Fourier map but were constrained to ride on their parent atoms, with U iso(H) = 1.5U eq(O). The C-bound H atoms were included in calculated positions and treated as riding atoms, with C—H = 0.95 Å and U iso(H) = 1.2–1.5U eq(C).
Table 3

Experimental details

Crystal data
Chemical formula[Ni(C13H18NO3)2(C12H8N2)]
M r 711.48
Crystal system, space groupOrthorhombic, P212121
Temperature (K)296
a, b, c (Å)12.9336 (4), 14.5249 (4), 19.9141 (5)
V3)3741.05 (18)
Z 4
Radiation typeMo Kα
μ (mm−1)0.57
Crystal size (mm)0.30 × 0.22 × 0.20
 
Data collection
DiffractometerBruker APEXII CCD area detector
Absorption correctionMulti-scan (SADABS; Bruker, 2005)
T min, T max 0.848, 0.895
No. of measured, independent and observed [I > 2σ(I)] reflections29587, 8568, 6012
R int 0.029
(sin θ/λ)max−1)0.650
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.043, 0.133, 0.95
No. of reflections8568
No. of parameters449
No. of restraints18
H-atom treatmentH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.76, −0.29
Absolute structureRefined as an inversion twin
Absolute structure parameter−0.010 (18)

Computer programs: APEX2 (Bruker, 2005 ▸), SAINT (Bruker, 2005 ▸), SHELXT2014 (Sheldrick, 2015a ▸), Mercury (Macrae et al., 2008 ▸), SHELXTL (Sheldrick, 2008 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), SHELXL2016 (Sheldrick, 2015b ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989017012014/im2482sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017012014/im2482Isup2.hkl CCDC reference: 1548336 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Ni(C13H18NO3)2(C12H8N2)]Dx = 1.263 Mg m3
Mr = 711.48Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 9936 reflections
a = 12.9336 (4) Åθ = 0.9–0.9°
b = 14.5249 (4) ŵ = 0.57 mm1
c = 19.9141 (5) ÅT = 296 K
V = 3741.05 (18) Å3Block, blue
Z = 40.30 × 0.22 × 0.20 mm
F(000) = 1504
Bruker APEXII CCD area detector diffractometer8568 independent reflections
Radiation source: fine-focus sealed tube, x-ray6012 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
phi and ω scansθmax = 27.5°, θmin = 1.7°
Absorption correction: multi-scan multi-scanh = −16→16
Tmin = 0.848, Tmax = 0.895k = −18→18
29587 measured reflectionsl = −25→25
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.043w = 1/[σ2(Fo2) + (0.0876P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.133(Δ/σ)max = 0.001
S = 0.95Δρmax = 0.76 e Å3
8568 reflectionsΔρmin = −0.29 e Å3
449 parametersAbsolute structure: Refined as an inversion twin
18 restraintsAbsolute structure parameter: −0.010 (18)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refined as a 2-component inversion twin
xyzUiso*/Ueq
Ni10.52225 (3)0.50277 (4)0.46103 (2)0.04058 (16)
O50.6501 (2)0.5145 (2)0.52079 (13)0.0468 (7)
O20.3621 (3)0.7541 (3)0.41899 (14)0.0724 (10)
H20.3114770.7872760.4136230.109*
O10.6688 (2)0.2074 (2)0.43473 (17)0.0571 (8)
H10.7208270.1754500.4316920.086*
O40.4054 (2)0.5004 (3)0.53063 (12)0.0514 (6)
O60.7370 (2)0.6064 (2)0.58909 (15)0.0616 (9)
O30.3183 (3)0.4110 (3)0.60140 (16)0.0679 (9)
N40.4109 (2)0.4992 (3)0.38398 (15)0.0475 (7)
N20.5284 (3)0.6495 (2)0.47445 (15)0.0419 (8)
H2A0.4571260.6701310.4816190.050*
N30.6159 (3)0.4852 (3)0.37583 (17)0.0503 (9)
N10.5230 (3)0.3595 (2)0.48649 (15)0.0435 (8)
H1A0.5954720.3415730.4925090.052*
C380.4518 (3)0.4861 (3)0.3217 (2)0.0502 (10)
C370.5622 (4)0.4787 (3)0.3174 (2)0.0483 (10)
C10.5863 (3)0.1533 (3)0.45023 (19)0.0478 (10)
C200.4058 (4)0.7348 (3)0.3577 (2)0.0517 (11)
C250.5103 (4)0.7109 (3)0.35645 (19)0.0482 (10)
C60.4888 (3)0.1959 (3)0.45109 (18)0.0470 (9)
C140.6642 (3)0.5909 (3)0.54962 (19)0.0459 (9)
C130.3911 (3)0.4256 (3)0.5619 (2)0.0469 (10)
C20.5965 (4)0.0606 (3)0.4652 (2)0.0603 (12)
H2B0.6616910.0335350.4658670.072*
C330.6104 (5)0.4661 (3)0.2544 (2)0.0616 (13)
C70.4781 (3)0.2962 (3)0.4355 (2)0.0482 (9)
H7A0.5110750.3082240.3926330.058*
H7B0.4051760.3103680.4305820.058*
C90.5481 (4)0.3555 (4)0.6112 (2)0.0568 (12)
H9A0.5939900.4073100.6035340.068*
H9B0.5097240.3679620.6520280.068*
C300.3934 (4)0.4825 (3)0.2632 (2)0.0652 (14)
C80.4719 (3)0.3501 (3)0.55296 (18)0.0464 (10)
H80.4369470.2902950.5546660.056*
C150.5844 (3)0.6659 (3)0.5380 (2)0.0488 (9)
H150.6206960.7249080.5343880.059*
C210.3505 (4)0.7395 (3)0.2990 (2)0.0633 (12)
H210.2804400.7539630.3001200.076*
C240.5575 (4)0.6950 (3)0.2947 (2)0.0569 (11)
H240.6273290.6798600.2932890.068*
C50.4047 (4)0.1405 (4)0.4663 (2)0.0647 (13)
H50.3392530.1669230.4676030.078*
C160.5130 (5)0.6701 (4)0.5987 (2)0.0756 (15)
H16A0.5546930.6682470.6391880.091*
H16B0.4690590.6160330.5986680.091*
C40.4145 (5)0.0476 (4)0.4798 (3)0.0767 (17)
H40.3562500.0123250.4890770.092*
C230.5026 (5)0.7013 (3)0.2357 (2)0.0642 (13)
H230.5352430.6913610.1947120.077*
C220.3988 (5)0.7226 (4)0.2379 (2)0.0678 (14)
H220.3608830.7257030.1982370.081*
C320.5485 (6)0.4609 (4)0.1963 (3)0.0774 (16)
H320.5798030.4517340.1548330.093*
C260.5726 (4)0.7091 (3)0.4201 (2)0.0526 (10)
H26A0.6417370.6874880.4096100.063*
H26B0.5786540.7714770.4369470.063*
C340.7167 (5)0.4601 (4)0.2532 (3)0.0755 (16)
H340.7512730.4514360.2127470.091*
C280.2451 (4)0.5091 (4)0.3321 (3)0.0772 (15)
H280.1744360.5187300.3372090.093*
C310.4447 (7)0.4688 (4)0.1996 (2)0.086 (2)
H310.4057900.4654120.1604420.104*
C30.5097 (5)0.0080 (4)0.4792 (2)0.0736 (14)
H30.516635−0.0544680.4883180.088*
C290.2855 (5)0.4945 (5)0.2700 (3)0.0809 (16)
H290.2427230.4925160.2325410.097*
C270.3098 (3)0.5095 (4)0.3884 (2)0.0614 (12)
H270.2803720.5173930.4305890.074*
C360.7183 (4)0.4780 (4)0.3723 (3)0.0621 (13)
H360.7565730.4804330.4117650.075*
C100.6139 (4)0.2694 (4)0.6222 (3)0.0733 (15)
H100.6436330.2521490.5787630.088*
C350.7705 (5)0.4669 (4)0.3114 (3)0.0821 (17)
H350.8423170.4641020.3107350.098*
C110.7018 (5)0.2873 (6)0.6694 (3)0.105 (2)
H11A0.7411470.3390420.6536070.157*
H11B0.7455480.2339660.6713620.157*
H11C0.6751800.3003900.7133300.157*
C120.5484 (7)0.1884 (5)0.6466 (4)0.118 (3)
H12A0.5319730.1966110.6932230.177*
H12B0.5864030.1321590.6409020.177*
H12C0.4856210.1855090.6209370.177*
C170.4436 (7)0.7575 (8)0.6008 (3)0.127 (2)
H170.4172950.7711650.5556910.153*
C190.3515 (8)0.7320 (10)0.6487 (5)0.198 (5)
H19A0.3457220.6662320.6517900.297*
H19B0.2884080.7569820.6310460.297*
H19C0.3641860.7571470.6924860.297*
C180.5090 (12)0.8401 (8)0.6272 (5)0.193 (4)
H18A0.5321400.8271740.6720690.290*
H18B0.4673150.8947850.6274290.290*
H18C0.5677410.8491360.5985440.290*
U11U22U33U12U13U23
Ni10.0418 (2)0.0431 (3)0.0368 (2)0.0001 (3)−0.00271 (18)0.0003 (2)
O50.0454 (13)0.0433 (19)0.0517 (14)−0.0012 (14)−0.0096 (11)−0.0007 (13)
O20.082 (2)0.090 (3)0.0458 (17)0.040 (2)0.0103 (15)0.0084 (16)
O10.0533 (16)0.0481 (19)0.0699 (19)−0.0028 (15)−0.0016 (15)0.0030 (15)
O40.0505 (14)0.0540 (18)0.0497 (14)0.0091 (18)0.0030 (11)−0.0002 (18)
O60.0625 (18)0.056 (2)0.0662 (19)−0.0065 (15)−0.0276 (16)−0.0032 (15)
O30.0606 (18)0.074 (2)0.070 (2)−0.0105 (17)0.0182 (17)−0.0040 (17)
N40.0471 (16)0.0445 (19)0.0510 (17)−0.001 (2)−0.0075 (13)0.0064 (19)
N20.0456 (18)0.0416 (19)0.0386 (16)0.0022 (16)−0.0017 (15)0.0042 (13)
N30.0548 (19)0.050 (3)0.0459 (17)0.0001 (18)0.0046 (14)0.0006 (17)
N10.0477 (19)0.045 (2)0.0383 (16)−0.0025 (17)−0.0040 (15)−0.0011 (13)
C380.072 (3)0.037 (3)0.043 (2)−0.004 (2)−0.0118 (17)0.0045 (17)
C370.070 (2)0.034 (3)0.041 (2)−0.0006 (19)0.0002 (19)0.0013 (16)
C10.061 (2)0.042 (2)0.041 (2)−0.007 (2)−0.0039 (18)0.0013 (17)
C200.069 (3)0.042 (3)0.044 (2)0.013 (2)0.003 (2)0.0062 (18)
C250.066 (3)0.036 (2)0.042 (2)0.002 (2)0.0048 (19)0.0047 (16)
C60.055 (2)0.046 (2)0.040 (2)−0.005 (2)−0.0035 (18)−0.0070 (17)
C140.051 (2)0.046 (3)0.041 (2)−0.0065 (19)−0.0032 (17)0.0009 (18)
C130.044 (2)0.056 (3)0.040 (2)−0.009 (2)−0.0013 (17)−0.0047 (19)
C20.082 (3)0.044 (3)0.055 (3)−0.003 (2)−0.004 (2)−0.002 (2)
C330.101 (4)0.037 (3)0.047 (2)0.000 (2)0.007 (3)−0.0041 (18)
C70.054 (2)0.047 (3)0.043 (2)0.003 (2)−0.0104 (19)−0.0044 (17)
C90.074 (3)0.059 (3)0.038 (2)−0.006 (2)−0.003 (2)−0.0003 (19)
C300.095 (4)0.045 (3)0.055 (3)−0.011 (3)−0.025 (2)0.006 (2)
C80.055 (2)0.046 (3)0.038 (2)−0.0071 (19)−0.0025 (17)0.0020 (16)
C150.058 (2)0.046 (2)0.043 (2)−0.0005 (19)−0.008 (2)−0.0009 (18)
C210.077 (3)0.058 (3)0.055 (3)0.011 (3)−0.008 (2)0.009 (2)
C240.072 (3)0.050 (3)0.049 (2)0.004 (2)0.014 (2)0.008 (2)
C50.065 (3)0.072 (4)0.057 (3)−0.016 (3)0.008 (2)−0.016 (3)
C160.083 (3)0.099 (4)0.044 (2)0.026 (3)−0.003 (2)−0.016 (2)
C40.097 (4)0.062 (4)0.071 (3)−0.035 (3)0.021 (3)−0.015 (3)
C230.097 (4)0.052 (3)0.044 (2)0.008 (3)0.012 (2)0.0053 (19)
C220.100 (4)0.062 (3)0.041 (2)0.001 (3)−0.011 (2)0.007 (2)
C320.126 (5)0.058 (3)0.048 (3)0.009 (3)0.000 (3)−0.007 (2)
C260.059 (2)0.047 (3)0.051 (2)−0.001 (2)0.004 (2)0.0077 (19)
C340.104 (4)0.061 (3)0.061 (3)−0.001 (3)0.033 (3)−0.008 (2)
C280.057 (2)0.072 (4)0.103 (4)−0.010 (3)−0.031 (3)0.015 (4)
C310.159 (6)0.060 (4)0.040 (3)−0.002 (4)−0.029 (3)−0.003 (2)
C30.119 (4)0.043 (3)0.059 (3)−0.021 (4)0.014 (3)0.001 (2)
C290.096 (4)0.068 (4)0.078 (3)−0.013 (4)−0.044 (3)0.013 (3)
C270.057 (2)0.058 (3)0.069 (3)−0.005 (3)−0.006 (2)0.014 (3)
C360.055 (2)0.068 (4)0.063 (3)0.004 (2)0.010 (2)−0.001 (2)
C100.073 (3)0.088 (4)0.059 (3)0.015 (3)−0.012 (3)0.011 (3)
C350.074 (3)0.085 (5)0.087 (4)0.000 (3)0.026 (3)−0.019 (3)
C110.084 (4)0.155 (7)0.075 (4)0.013 (4)−0.019 (3)0.025 (4)
C120.150 (7)0.074 (5)0.129 (6)−0.005 (5)−0.048 (5)0.043 (4)
C170.133 (5)0.179 (6)0.069 (3)0.056 (4)−0.008 (3)−0.025 (4)
C190.143 (7)0.323 (12)0.128 (6)0.110 (8)0.014 (6)−0.057 (8)
C180.293 (11)0.140 (8)0.147 (7)0.083 (8)−0.016 (9)−0.040 (6)
Ni1—O52.044 (2)C15—C161.522 (7)
Ni1—O42.051 (3)C15—H150.9800
Ni1—N32.101 (3)C21—C221.390 (7)
Ni1—N42.105 (3)C21—H210.9300
Ni1—N12.141 (3)C24—C231.376 (7)
Ni1—N22.149 (3)C24—H240.9300
O5—C141.262 (5)C5—C41.382 (8)
O2—C201.373 (5)C5—H50.9300
O2—H20.8200C16—C171.555 (10)
O1—C11.360 (5)C16—H16A0.9700
O1—H10.8200C16—H16B0.9700
O4—C131.265 (6)C4—C31.359 (8)
O6—C141.247 (5)C4—H40.9300
O3—C131.245 (5)C23—C221.379 (8)
N4—C271.318 (5)C23—H230.9300
N4—C381.362 (5)C22—H220.9300
N2—C151.477 (5)C32—C311.348 (9)
N2—C261.500 (5)C32—H320.9300
N2—H2A0.9800C26—H26A0.9700
N3—C361.330 (6)C26—H26B0.9700
N3—C371.359 (5)C34—C351.355 (9)
N1—C81.486 (5)C34—H340.9300
N1—C71.489 (5)C28—C291.359 (8)
N1—H1A0.9800C28—C271.398 (6)
C38—C301.389 (6)C28—H280.9300
C38—C371.433 (6)C31—H310.9300
C37—C331.414 (6)C3—H30.9300
C1—C21.386 (6)C29—H290.9300
C1—C61.405 (6)C27—H270.9300
C20—C211.373 (6)C36—C351.397 (7)
C20—C251.395 (7)C36—H360.9300
C25—C241.392 (6)C10—C111.497 (8)
C25—C261.502 (6)C10—C121.529 (9)
C6—C51.386 (6)C10—H100.9800
C6—C71.496 (6)C35—H350.9300
C14—C151.519 (6)C11—H11A0.9600
C13—C81.525 (6)C11—H11B0.9600
C2—C31.386 (7)C11—H11C0.9600
C2—H2B0.9300C12—H12A0.9600
C33—C341.377 (9)C12—H12B0.9600
C33—C321.408 (8)C12—H12C0.9600
C7—H7A0.9700C17—C191.570 (14)
C7—H7B0.9700C17—C181.560 (15)
C9—C101.529 (8)C17—H170.9800
C9—C81.524 (6)C19—H19A0.9600
C9—H9A0.9700C19—H19B0.9600
C9—H9B0.9700C19—H19C0.9600
C30—C291.413 (8)C18—H18A0.9600
C30—C311.444 (8)C18—H18B0.9600
C8—H80.9800C18—H18C0.9600
O5—Ni1—O4101.77 (11)C20—C21—C22120.2 (5)
O5—Ni1—N390.80 (12)C20—C21—H21119.9
O4—Ni1—N3165.66 (13)C22—C21—H21119.9
O5—Ni1—N4168.45 (12)C23—C24—C25121.1 (4)
O4—Ni1—N489.30 (11)C23—C24—H24119.4
N3—Ni1—N478.64 (13)C25—C24—H24119.4
O5—Ni1—N186.54 (13)C4—C5—C6122.5 (5)
O4—Ni1—N180.03 (14)C4—C5—H5118.7
N3—Ni1—N194.04 (15)C6—C5—H5118.7
N4—Ni1—N198.73 (16)C15—C16—C17113.8 (5)
O5—Ni1—N279.32 (13)C15—C16—H16A108.8
O4—Ni1—N287.72 (14)C17—C16—H16A108.8
N3—Ni1—N2101.52 (15)C15—C16—H16B108.8
N4—Ni1—N298.07 (16)C17—C16—H16B108.8
N1—Ni1—N2159.02 (12)H16A—C16—H16B107.7
C14—O5—Ni1117.1 (3)C3—C4—C5119.6 (5)
C20—O2—H2109.5C3—C4—H4120.2
C1—O1—H1109.5C5—C4—H4120.2
C13—O4—Ni1117.1 (3)C22—C23—C24119.4 (4)
C27—N4—C38117.5 (3)C22—C23—H23120.3
C27—N4—Ni1128.8 (3)C24—C23—H23120.3
C38—N4—Ni1113.6 (2)C23—C22—C21120.3 (4)
C15—N2—C26109.8 (3)C23—C22—H22119.8
C15—N2—Ni1106.5 (2)C21—C22—H22119.8
C26—N2—Ni1119.8 (3)C31—C32—C33121.5 (5)
C15—N2—H2A106.7C31—C32—H32119.3
C26—N2—H2A106.7C33—C32—H32119.3
Ni1—N2—H2A106.7N2—C26—C25114.5 (4)
C36—N3—C37117.3 (4)N2—C26—H26A108.6
C36—N3—Ni1128.8 (3)C25—C26—H26A108.6
C37—N3—Ni1113.9 (3)N2—C26—H26B108.6
C8—N1—C7112.1 (3)C25—C26—H26B108.6
C8—N1—Ni1107.4 (2)H26A—C26—H26B107.6
C7—N1—Ni1115.9 (2)C35—C34—C33119.6 (5)
C8—N1—H1A107.0C35—C34—H34120.2
C7—N1—H1A107.0C33—C34—H34120.2
Ni1—N1—H1A107.0C29—C28—C27119.9 (5)
N4—C38—C30123.9 (4)C29—C28—H28120.0
N4—C38—C37116.9 (3)C27—C28—H28120.0
C30—C38—C37119.2 (4)C32—C31—C30120.8 (5)
N3—C37—C33122.9 (4)C32—C31—H31119.6
N3—C37—C38117.0 (4)C30—C31—H31119.6
C33—C37—C38120.1 (4)C4—C3—C2120.2 (5)
O1—C1—C2122.4 (4)C4—C3—H3119.9
O1—C1—C6116.9 (4)C2—C3—H3119.9
C2—C1—C6120.7 (4)C28—C29—C30119.1 (4)
O2—C20—C21122.1 (4)C28—C29—H29120.4
O2—C20—C25117.8 (4)C30—C29—H29120.4
C21—C20—C25120.1 (4)N4—C27—C28122.7 (5)
C20—C25—C24118.8 (4)N4—C27—H27118.7
C20—C25—C26120.6 (4)C28—C27—H27118.7
C24—C25—C26120.5 (4)N3—C36—C35122.4 (5)
C5—C6—C1116.8 (4)N3—C36—H36118.8
C5—C6—C7122.6 (4)C35—C36—H36118.8
C1—C6—C7120.6 (4)C11—C10—C12110.8 (5)
O6—C14—O5123.7 (4)C11—C10—C9111.8 (5)
O6—C14—C15118.6 (4)C12—C10—C9111.5 (5)
O5—C14—C15117.6 (3)C11—C10—H10107.5
O3—C13—O4124.6 (4)C12—C10—H10107.5
O3—C13—C8118.0 (4)C9—C10—H10107.5
O4—C13—C8117.3 (3)C34—C35—C36120.2 (5)
C3—C2—C1120.1 (5)C34—C35—H35119.9
C3—C2—H2B120.0C36—C35—H35119.9
C1—C2—H2B120.0C10—C11—H11A109.5
C34—C33—C32123.4 (5)C10—C11—H11B109.5
C34—C33—C37117.6 (5)H11A—C11—H11B109.5
C32—C33—C37118.9 (5)C10—C11—H11C109.5
N1—C7—C6115.1 (3)H11A—C11—H11C109.5
N1—C7—H7A108.5H11B—C11—H11C109.5
C6—C7—H7A108.5C10—C12—H12A109.5
N1—C7—H7B108.5C10—C12—H12B109.5
C6—C7—H7B108.5H12A—C12—H12B109.5
H7A—C7—H7B107.5C10—C12—H12C109.5
C10—C9—C8115.3 (4)H12A—C12—H12C109.5
C10—C9—H9A108.4H12B—C12—H12C109.5
C8—C9—H9A108.4C19—C17—C16105.2 (8)
C10—C9—H9B108.4C19—C17—C18112.8 (8)
C8—C9—H9B108.4C16—C17—C18108.8 (7)
H9A—C9—H9B107.5C19—C17—H17110.0
C38—C30—C29116.9 (5)C16—C17—H17110.0
C38—C30—C31119.4 (5)C18—C17—H17110.0
C29—C30—C31123.7 (5)C17—C19—H19A109.5
N1—C8—C13110.0 (3)C17—C19—H19B109.5
N1—C8—C9112.6 (3)H19A—C19—H19B109.5
C13—C8—C9108.5 (3)C17—C19—H19C109.5
N1—C8—H8108.5H19A—C19—H19C109.5
C13—C8—H8108.5H19B—C19—H19C109.5
C9—C8—H8108.5C17—C18—H18A109.5
N2—C15—C16112.9 (4)C17—C18—H18B109.5
N2—C15—C14110.4 (3)H18A—C18—H18B109.5
C16—C15—C14108.7 (4)C17—C18—H18C109.5
N2—C15—H15108.3H18A—C18—H18C109.5
C16—C15—H15108.3H18B—C18—H18C109.5
C14—C15—H15108.3
C27—N4—C38—C30−0.5 (7)C26—N2—C15—C16138.5 (4)
Ni1—N4—C38—C30−179.2 (4)Ni1—N2—C15—C16−90.4 (4)
C27—N4—C38—C37177.6 (5)C26—N2—C15—C14−99.6 (4)
Ni1—N4—C38—C37−1.2 (5)Ni1—N2—C15—C1431.5 (4)
C36—N3—C37—C33−0.8 (7)O6—C14—C15—N2159.8 (3)
Ni1—N3—C37—C33−179.5 (3)O5—C14—C15—N2−23.3 (5)
C36—N3—C37—C38179.7 (4)O6—C14—C15—C16−75.8 (5)
Ni1—N3—C37—C380.9 (5)O5—C14—C15—C16101.1 (5)
N4—C38—C37—N30.2 (7)O2—C20—C21—C22177.6 (5)
C30—C38—C37—N3178.3 (4)C25—C20—C21—C22−1.6 (7)
N4—C38—C37—C33−179.4 (4)C20—C25—C24—C23−0.9 (6)
C30—C38—C37—C33−1.2 (7)C26—C25—C24—C23−176.4 (4)
O2—C20—C25—C24−177.1 (4)C1—C6—C5—C4−0.4 (6)
C21—C20—C25—C242.1 (7)C7—C6—C5—C4179.0 (4)
O2—C20—C25—C26−1.6 (6)N2—C15—C16—C17−70.1 (6)
C21—C20—C25—C26177.6 (4)C14—C15—C16—C17167.1 (5)
O1—C1—C6—C5179.5 (4)C6—C5—C4—C31.1 (7)
C2—C1—C6—C5−1.1 (6)C25—C24—C23—C22−0.8 (7)
O1—C1—C6—C70.0 (5)C24—C23—C22—C211.4 (8)
C2—C1—C6—C7179.5 (4)C20—C21—C22—C23−0.2 (8)
Ni1—O5—C14—O6177.6 (3)C34—C33—C32—C31−178.7 (5)
Ni1—O5—C14—C150.9 (5)C37—C33—C32—C310.8 (8)
Ni1—O4—C13—O3−173.8 (3)C15—N2—C26—C25−169.7 (3)
Ni1—O4—C13—C89.4 (4)Ni1—N2—C26—C2566.6 (4)
O1—C1—C2—C3−178.6 (4)C20—C25—C26—N255.0 (6)
C6—C1—C2—C32.0 (7)C24—C25—C26—N2−129.5 (4)
N3—C37—C33—C340.0 (7)C32—C33—C34—C35179.2 (5)
C38—C37—C33—C34179.6 (5)C37—C33—C34—C35−0.3 (7)
N3—C37—C33—C32−179.5 (4)C33—C32—C31—C30−0.3 (8)
C38—C37—C33—C320.0 (7)C38—C30—C31—C32−0.9 (8)
C8—N1—C7—C6−62.0 (5)C29—C30—C31—C32177.7 (6)
Ni1—N1—C7—C6174.2 (3)C5—C4—C3—C2−0.1 (8)
C5—C6—C7—N1112.1 (4)C1—C2—C3—C4−1.4 (7)
C1—C6—C7—N1−68.5 (5)C27—C28—C29—C30−1.7 (9)
N4—C38—C30—C290.9 (7)C38—C30—C29—C280.2 (8)
C37—C38—C30—C29−177.1 (5)C31—C30—C29—C28−178.5 (5)
N4—C38—C30—C31179.7 (5)C38—N4—C27—C28−1.1 (8)
C37—C38—C30—C311.7 (7)Ni1—N4—C27—C28177.4 (4)
C7—N1—C8—C13−98.4 (4)C29—C28—C27—N42.3 (9)
Ni1—N1—C8—C1330.0 (4)C37—N3—C36—C351.8 (8)
C7—N1—C8—C9140.4 (4)Ni1—N3—C36—C35−179.7 (4)
Ni1—N1—C8—C9−91.2 (4)C8—C9—C10—C11167.2 (4)
O3—C13—C8—N1155.4 (4)C8—C9—C10—C12−68.1 (6)
O4—C13—C8—N1−27.6 (5)C33—C34—C35—C361.3 (8)
O3—C13—C8—C9−80.9 (5)N3—C36—C35—C34−2.1 (9)
O4—C13—C8—C996.1 (4)C15—C16—C17—C19159.5 (6)
C10—C9—C8—N1−75.5 (5)C15—C16—C17—C18−79.4 (7)
C10—C9—C8—C13162.4 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2···O6i0.821.822.597 (5)158
O1—H1···O3ii0.821.902.686 (5)161
N2—H2A···O20.982.132.856 (5)129
N1—H1A···O10.982.453.082 (5)122
C2—H2B···O3ii0.932.563.187 (6)125
C9—H9A···O50.972.383.212 (6)143
C16—H16B···O40.972.313.140 (7)143
C27—H27···O40.932.583.094 (5)116
C36—H36···O50.932.623.132 (6)115
  14 in total

1.  Synthesis, structure and magnetism of a new ferromagnetic hexanuclear nickel cluster with a dicubane-like core.

Authors:  Stefan Wörl; Hans Pritzkow; Igor O Fritsky; Roland Krämer
Journal:  Dalton Trans       Date:  2004-11-18       Impact factor: 4.390

2.  Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy.

Authors:  Florian Weigend; Reinhart Ahlrichs
Journal:  Phys Chem Chem Phys       Date:  2005-08-04       Impact factor: 3.676

3.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

4.  Effect of form of iron on the interaction between nickel and iron in rats: growth and blood parameters.

Authors:  F H Nielsen
Journal:  J Nutr       Date:  1980-05       Impact factor: 4.798

5.  Mixed-ligand copper(II)-phenolate complexes: effect of coligand on enhanced DNA and protein binding, DNA cleavage, and anticancer activity.

Authors:  Venugopal Rajendiran; Ramasamy Karthik; Mallayan Palaniandavar; Helen Stoeckli-Evans; Vaiyapuri Subbarayan Periasamy; Mohammad Abdulkader Akbarsha; Bangalore Suresh Srinag; Hanumanthappa Krishnamurthy
Journal:  Inorg Chem       Date:  2007-09-05       Impact factor: 5.165

6.  Potential antitumor agents: synthesis and biological properties of aliphatic amino acid 9-hydroxyellipticinium derivatives.

Authors:  C Auclair; E Voisin; H Banoun; C Paoletti; J Bernadou; B Meunier
Journal:  J Med Chem       Date:  1984-09       Impact factor: 7.446

7.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

8.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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