| Literature DB >> 28932450 |
Okky Dwichandra Putra1, Daiki Umeda1, Kaori Fukuzawa1, Mihoko Gunji1, Etsuo Yonemochi1.
Abstract
Epalerstat {systematic name: (5Z)-5-[(2E)-2-methyl-3-phenyl-prop-2-en-1-yl-idene]-4-oxo-2-sulfanyl-idene-1,3-thia-zolidine-3-acetic acid} crystallized as an acetone monosolvate, C15H13NO3S2·C3H6O. In the epalerstat mol-ecule, the methyl-propyl-enediene moiety is inclined to the phenyl ring and the five-membered rhodamine ring by 21.4 (4) and 4.7 (4)°, respectively. In addition, the acetic acid moiety is found to be almost normal to the rhodamine ring, making a dihedral angle of 85.1 (2)°. In the crystal, a pair of O-H⋯O hydrogen bonds between the carb-oxy-lic acid groups of epalerstat mol-ecules form inversion dimers with an R22(8) loop. The dimers are linked by pairs of C-H⋯O hydrogen bonds, enclosing R22(20) loops, forming chains propagating along the [101] direction. In addition, the acetone mol-ecules are linked to the chain by a C-H⋯O hydrogen bond. Epalerstat acetone monosolvate was found to be isotypic with epalerstat tertra-hydro-furan solvate [Umeda et al. (2017 ▸). Acta Cryst. E73, 941-944].Entities:
Keywords: acetone; crystal structure; epalerstat; hydrogen bonding; isotypic; monosolvate
Year: 2017 PMID: 28932450 PMCID: PMC5598862 DOI: 10.1107/S2056989017010751
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of epalerstat acetone monosolvate, with the atom labelling and displacement ellipsoids drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3 | 0.91 (3) | 1.75 (3) | 2.645 (2) | 171 (3) |
| C6—H6⋯O1ii | 0.95 | 2.50 | 3.440 (3) | 168 |
| C1—H1⋯O4iii | 0.95 | 2.58 | 3.525 (3) | 171 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2A view along the b axis of the crystal packing of the title compound. Blue and orange dashed lines represent O—H⋯O and C—H⋯O hydrogen bonds, respectively. Only H atoms involved in these interactions have been included.
Figure 3The packing view along the b axis of (a) epalerstat acetone monosolvate and (b) epalerstat tetrahydrofuran monosolvate shows the isostructurality between the two solvates. H atoms have been omitted for clarity, and the epalerstat molecules and the solvent molecules are drawn as capped sticks and spacefill models, respectively.
Experimental details
| Crystal data | |
| Chemical formula | C15H13NO3S2·C3H6O |
|
| 377.46 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 93 |
|
| 7.9623 (1), 8.1806 (2), 15.6919 (3) |
| α, β, γ (°) | 97.852 (7), 99.837 (7), 113.206 (8) |
|
| 901.83 (6) |
|
| 2 |
| Radiation type | Cu |
| μ (mm−1) | 2.87 |
| Crystal size (mm) | 0.35 × 0.24 × 0.10 |
| Data collection | |
| Diffractometer | Rigaku R-AXIS RAPID II |
| Absorption correction | Multi-scan ( |
|
| 0.378, 0.750 |
| No. of measured, independent and observed [ | 10593, 3235, 2790 |
|
| 0.045 |
| (sin θ/λ)max (Å−1) | 0.602 |
| Refinement | |
|
| 0.050, 0.137, 1.11 |
| No. of reflections | 3235 |
| No. of parameters | 233 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.73, −0.30 |
Computer programs: PROCESS-AUTO (Rigaku, 1998 ▸), SHELXS2014 (Sheldrick, 2008 ▸), Mercury (Macrae et al., 2008 ▸), SHELXL2016 (Sheldrick, 2015 ▸) and PLATON (Spek, 2009 ▸).
| C15H13NO3S2·C3H6O | |
| Triclinic, | |
| Cu | |
| Cell parameters from 10593 reflections | |
| θ = 5.9–68.2° | |
| α = 97.852 (7)° | µ = 2.87 mm−1 |
| β = 99.837 (7)° | |
| γ = 113.206 (8)° | Block, yellow |
| 0.35 × 0.24 × 0.10 mm |
| Rigaku R-AXIS RAPID II diffractometer | 3235 independent reflections |
| Radiation source: rotating anode X-ray, RIGAKU | 2790 reflections with |
| Detector resolution: 10.0 pixels mm-1 | |
| ω scan | θmax = 68.2°, θmin = 5.9° |
| Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | |
| 10593 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3235 reflections | (Δ/σ)max < 0.001 |
| 233 parameters | Δρmax = 0.73 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
| S1 | 0.32326 (7) | 0.22776 (7) | 0.40775 (3) | 0.0232 (2) | |
| S2 | 0.53005 (7) | 0.15013 (8) | 0.27814 (4) | 0.0290 (2) | |
| O1 | −0.15383 (19) | −0.1417 (2) | 0.26694 (9) | 0.0270 (5) | |
| O2 | 0.0245 (2) | 0.0465 (2) | 0.10793 (9) | 0.0257 (5) | |
| O3 | 0.0821 (2) | −0.1687 (2) | 0.02943 (10) | 0.0304 (5) | |
| N1 | 0.1578 (2) | −0.0247 (2) | 0.26497 (11) | 0.0214 (5) | |
| C1 | −0.2491 (3) | 0.5295 (3) | 0.76805 (14) | 0.0256 (7) | |
| C2 | −0.0768 (3) | 0.6025 (3) | 0.74641 (14) | 0.0252 (7) | |
| C3 | −0.0449 (3) | 0.5163 (3) | 0.67266 (13) | 0.0232 (6) | |
| C4 | −0.1877 (3) | 0.3532 (3) | 0.61713 (14) | 0.0214 (6) | |
| O4 | 0.3463 (2) | 0.3068 (2) | 0.03521 (11) | 0.0438 (6) | |
| C5 | −0.3632 (3) | 0.2835 (3) | 0.63920 (14) | 0.0235 (6) | |
| C6 | −0.3931 (3) | 0.3700 (3) | 0.71326 (14) | 0.0252 (7) | |
| C7 | −0.1685 (3) | 0.2516 (3) | 0.53833 (13) | 0.0216 (6) | |
| C8 | −0.0128 (3) | 0.2508 (3) | 0.51367 (13) | 0.0215 (6) | |
| C9 | 0.1858 (3) | 0.3596 (3) | 0.56879 (14) | 0.0242 (6) | |
| C10 | −0.0467 (3) | 0.1284 (3) | 0.43048 (13) | 0.0218 (6) | |
| C11 | 0.0769 (3) | 0.1067 (3) | 0.38588 (13) | 0.0211 (6) | |
| C12 | 0.0075 (3) | −0.0322 (3) | 0.30199 (13) | 0.0220 (7) | |
| C13 | 0.3343 (3) | 0.1078 (3) | 0.30963 (14) | 0.0226 (6) | |
| C14 | 0.1251 (3) | −0.1486 (3) | 0.18203 (13) | 0.0234 (6) | |
| C15 | 0.0718 (3) | −0.0778 (3) | 0.10282 (14) | 0.0230 (6) | |
| C16 | 0.6721 (4) | 0.3855 (4) | 0.08636 (16) | 0.0463 (9) | |
| C17 | 0.4865 (3) | 0.2987 (3) | 0.01874 (15) | 0.0306 (7) | |
| C18 | 0.4837 (4) | 0.2023 (4) | −0.07037 (16) | 0.0397 (8) | |
| H1 | −0.26853 | 0.58768 | 0.81968 | 0.0310* | |
| H2 | 0.02089 | 0.71326 | 0.78271 | 0.0300* | |
| H3 | 0.07467 | 0.56789 | 0.65942 | 0.0280* | |
| H3A | 0.034 (4) | −0.130 (4) | −0.016 (2) | 0.066 (10)* | |
| H5 | −0.46298 | 0.17474 | 0.60237 | 0.0280* | |
| H6 | −0.51254 | 0.32025 | 0.72678 | 0.0300* | |
| H7 | −0.28463 | 0.17230 | 0.49709 | 0.0260* | |
| H9A | 0.24324 | 0.47371 | 0.54951 | 0.0360* | |
| H9B | 0.25903 | 0.28868 | 0.56141 | 0.0360* | |
| H9C | 0.18490 | 0.38731 | 0.63143 | 0.0360* | |
| H10 | −0.17563 | 0.05124 | 0.40288 | 0.0260* | |
| H14A | 0.02271 | −0.26889 | 0.17941 | 0.0280* | |
| H14B | 0.24067 | −0.16584 | 0.17988 | 0.0280* | |
| H16A | 0.66246 | 0.45979 | 0.13819 | 0.0690* | |
| H16B | 0.76964 | 0.46315 | 0.06051 | 0.0690* | |
| H16C | 0.70570 | 0.29014 | 0.10460 | 0.0690* | |
| H18A | 0.35396 | 0.14160 | −0.10715 | 0.0590* | |
| H18B | 0.53261 | 0.11105 | −0.06269 | 0.0590* | |
| H18C | 0.56266 | 0.29111 | −0.09945 | 0.0590* |
| S1 | 0.0185 (3) | 0.0257 (3) | 0.0223 (3) | 0.0072 (2) | 0.0049 (2) | 0.0033 (2) |
| S2 | 0.0207 (3) | 0.0327 (4) | 0.0313 (3) | 0.0088 (3) | 0.0094 (2) | 0.0041 (3) |
| O1 | 0.0193 (8) | 0.0290 (9) | 0.0267 (8) | 0.0060 (7) | 0.0039 (6) | 0.0033 (7) |
| O2 | 0.0287 (8) | 0.0273 (9) | 0.0227 (8) | 0.0147 (7) | 0.0057 (6) | 0.0029 (6) |
| O3 | 0.0355 (9) | 0.0386 (10) | 0.0221 (8) | 0.0233 (8) | 0.0047 (7) | 0.0020 (7) |
| N1 | 0.0205 (9) | 0.0223 (10) | 0.0204 (9) | 0.0082 (8) | 0.0056 (7) | 0.0036 (7) |
| C1 | 0.0304 (12) | 0.0290 (13) | 0.0238 (11) | 0.0168 (10) | 0.0099 (9) | 0.0091 (9) |
| C2 | 0.0251 (11) | 0.0242 (12) | 0.0267 (11) | 0.0115 (9) | 0.0049 (9) | 0.0056 (9) |
| C3 | 0.0196 (10) | 0.0233 (12) | 0.0266 (11) | 0.0081 (9) | 0.0064 (9) | 0.0074 (9) |
| C4 | 0.0221 (11) | 0.0232 (11) | 0.0232 (11) | 0.0123 (9) | 0.0066 (9) | 0.0091 (9) |
| O4 | 0.0331 (10) | 0.0508 (11) | 0.0447 (11) | 0.0144 (8) | 0.0180 (8) | 0.0027 (9) |
| C5 | 0.0192 (10) | 0.0248 (12) | 0.0268 (11) | 0.0099 (9) | 0.0038 (9) | 0.0073 (9) |
| C6 | 0.0205 (11) | 0.0300 (13) | 0.0281 (11) | 0.0119 (9) | 0.0082 (9) | 0.0096 (10) |
| C7 | 0.0208 (11) | 0.0199 (11) | 0.0238 (11) | 0.0083 (9) | 0.0037 (9) | 0.0073 (9) |
| C8 | 0.0231 (11) | 0.0223 (11) | 0.0217 (10) | 0.0106 (9) | 0.0074 (9) | 0.0079 (9) |
| C9 | 0.0213 (11) | 0.0293 (12) | 0.0227 (10) | 0.0122 (9) | 0.0054 (9) | 0.0040 (9) |
| C10 | 0.0205 (10) | 0.0220 (11) | 0.0232 (11) | 0.0085 (9) | 0.0052 (9) | 0.0081 (9) |
| C11 | 0.0211 (11) | 0.0212 (11) | 0.0212 (10) | 0.0085 (9) | 0.0051 (8) | 0.0077 (9) |
| C12 | 0.0216 (11) | 0.0236 (12) | 0.0226 (11) | 0.0101 (9) | 0.0056 (9) | 0.0091 (9) |
| C13 | 0.0197 (11) | 0.0227 (11) | 0.0260 (11) | 0.0089 (9) | 0.0051 (9) | 0.0082 (9) |
| C14 | 0.0251 (11) | 0.0215 (11) | 0.0230 (11) | 0.0095 (9) | 0.0084 (9) | 0.0012 (9) |
| C15 | 0.0146 (10) | 0.0261 (12) | 0.0234 (11) | 0.0058 (9) | 0.0040 (8) | 0.0000 (9) |
| C16 | 0.0394 (15) | 0.0540 (18) | 0.0356 (14) | 0.0151 (13) | 0.0027 (12) | 0.0022 (13) |
| C17 | 0.0282 (13) | 0.0318 (13) | 0.0308 (12) | 0.0100 (10) | 0.0100 (10) | 0.0089 (10) |
| C18 | 0.0330 (13) | 0.0541 (17) | 0.0317 (13) | 0.0211 (12) | 0.0078 (11) | 0.0016 (12) |
| S1—C11 | 1.759 (3) | C11—C12 | 1.476 (3) |
| S1—C13 | 1.744 (2) | C14—C15 | 1.507 (3) |
| S2—C13 | 1.636 (3) | C1—H1 | 0.9500 |
| O1—C12 | 1.213 (3) | C2—H2 | 0.9500 |
| O2—C15 | 1.213 (3) | C3—H3 | 0.9500 |
| O3—C15 | 1.316 (3) | C5—H5 | 0.9500 |
| N1—C12 | 1.401 (3) | C6—H6 | 0.9500 |
| N1—C13 | 1.377 (3) | C7—H7 | 0.9500 |
| N1—C14 | 1.451 (3) | C9—H9B | 0.9800 |
| O3—H3A | 0.91 (3) | C9—H9C | 0.9800 |
| C1—C6 | 1.391 (3) | C9—H9A | 0.9800 |
| C1—C2 | 1.387 (4) | C10—H10 | 0.9500 |
| C2—C3 | 1.386 (3) | C14—H14A | 0.9900 |
| C3—C4 | 1.407 (3) | C14—H14B | 0.9900 |
| C4—C5 | 1.410 (4) | C16—C17 | 1.499 (4) |
| C4—C7 | 1.459 (3) | C17—C18 | 1.501 (3) |
| O4—C17 | 1.212 (3) | C16—H16A | 0.9800 |
| C5—C6 | 1.382 (3) | C16—H16B | 0.9800 |
| C7—C8 | 1.363 (4) | C16—H16C | 0.9800 |
| C8—C10 | 1.445 (3) | C18—H18A | 0.9800 |
| C8—C9 | 1.501 (3) | C18—H18B | 0.9800 |
| C10—C11 | 1.352 (3) | C18—H18C | 0.9800 |
| C11—S1—C13 | 93.02 (11) | C4—C3—H3 | 120.00 |
| C12—N1—C13 | 116.89 (18) | C4—C5—H5 | 119.00 |
| C12—N1—C14 | 120.69 (18) | C6—C5—H5 | 119.00 |
| C13—N1—C14 | 122.41 (19) | C1—C6—H6 | 120.00 |
| C15—O3—H3A | 107 (2) | C5—C6—H6 | 120.00 |
| C2—C1—C6 | 119.2 (2) | C4—C7—H7 | 114.00 |
| C1—C2—C3 | 121.0 (2) | C8—C7—H7 | 114.00 |
| C2—C3—C4 | 120.7 (2) | C8—C9—H9A | 109.00 |
| C3—C4—C5 | 117.4 (2) | C8—C9—H9B | 109.00 |
| C5—C4—C7 | 117.6 (2) | C8—C9—H9C | 109.00 |
| C3—C4—C7 | 125.1 (2) | H9A—C9—H9B | 109.00 |
| C4—C5—C6 | 121.4 (2) | H9A—C9—H9C | 109.00 |
| C1—C6—C5 | 120.3 (2) | H9B—C9—H9C | 109.00 |
| C4—C7—C8 | 131.1 (2) | C8—C10—H10 | 115.00 |
| C7—C8—C9 | 124.49 (19) | C11—C10—H10 | 115.00 |
| C7—C8—C10 | 116.2 (2) | N1—C14—H14A | 109.00 |
| C9—C8—C10 | 119.2 (2) | N1—C14—H14B | 109.00 |
| C8—C10—C11 | 129.9 (2) | C15—C14—H14A | 109.00 |
| S1—C11—C12 | 109.41 (17) | C15—C14—H14B | 109.00 |
| C10—C11—C12 | 119.9 (2) | H14A—C14—H14B | 108.00 |
| S1—C11—C10 | 130.59 (17) | O4—C17—C16 | 121.6 (2) |
| O1—C12—C11 | 127.7 (2) | O4—C17—C18 | 121.9 (2) |
| N1—C12—C11 | 110.3 (2) | C16—C17—C18 | 116.5 (2) |
| O1—C12—N1 | 122.00 (19) | C17—C16—H16A | 110.00 |
| S1—C13—N1 | 110.27 (17) | C17—C16—H16B | 109.00 |
| S2—C13—N1 | 126.30 (17) | C17—C16—H16C | 109.00 |
| S1—C13—S2 | 123.43 (14) | H16A—C16—H16B | 109.00 |
| N1—C14—C15 | 111.81 (19) | H16A—C16—H16C | 109.00 |
| O2—C15—C14 | 123.1 (2) | H16B—C16—H16C | 109.00 |
| O3—C15—C14 | 111.3 (2) | C17—C18—H18A | 109.00 |
| O2—C15—O3 | 125.6 (2) | C17—C18—H18B | 109.00 |
| C2—C1—H1 | 120.00 | C17—C18—H18C | 110.00 |
| C6—C1—H1 | 120.00 | H18A—C18—H18B | 109.00 |
| C1—C2—H2 | 120.00 | H18A—C18—H18C | 109.00 |
| C3—C2—H2 | 119.00 | H18B—C18—H18C | 109.00 |
| C2—C3—H3 | 120.00 | ||
| C13—S1—C11—C10 | −175.1 (2) | C2—C3—C4—C7 | −179.8 (2) |
| C13—S1—C11—C12 | 1.91 (17) | C7—C4—C5—C6 | 179.3 (2) |
| C11—S1—C13—S2 | 177.60 (16) | C5—C4—C7—C8 | −159.0 (2) |
| C11—S1—C13—N1 | −2.90 (17) | C3—C4—C5—C6 | −1.1 (3) |
| C14—N1—C13—S2 | 1.0 (3) | C3—C4—C7—C8 | 21.4 (4) |
| C14—N1—C12—C11 | 179.93 (18) | C4—C5—C6—C1 | 0.1 (4) |
| C12—N1—C13—S1 | 3.3 (2) | C4—C7—C8—C9 | 2.0 (4) |
| C13—N1—C12—O1 | 178.6 (2) | C4—C7—C8—C10 | 178.8 (2) |
| C14—N1—C12—O1 | 0.4 (3) | C9—C8—C10—C11 | −8.4 (4) |
| C13—N1—C12—C11 | −1.8 (3) | C7—C8—C10—C11 | 174.7 (2) |
| C13—N1—C14—C15 | −93.1 (3) | C8—C10—C11—C12 | 178.6 (2) |
| C14—N1—C13—S1 | −178.51 (15) | C8—C10—C11—S1 | −4.7 (4) |
| C12—N1—C13—S2 | −177.26 (17) | C10—C11—C12—O1 | −3.6 (4) |
| C12—N1—C14—C15 | 85.1 (2) | C10—C11—C12—N1 | 176.9 (2) |
| C2—C1—C6—C5 | 1.3 (3) | S1—C11—C12—N1 | −0.5 (2) |
| C6—C1—C2—C3 | −1.8 (4) | S1—C11—C12—O1 | 179.0 (2) |
| C1—C2—C3—C4 | 0.8 (4) | N1—C14—C15—O2 | −14.2 (3) |
| C2—C3—C4—C5 | 0.7 (3) | N1—C14—C15—O3 | 166.38 (19) |
| H··· | ||||
| O3—H3 | 0.91 (3) | 1.75 (3) | 2.645 (2) | 171 (3) |
| C6—H6···O1ii | 0.95 | 2.50 | 3.440 (3) | 168 |
| C1—H1···O4iii | 0.95 | 2.58 | 3.525 (3) | 171 |