| Literature DB >> 28932440 |
Julio Zukerman-Schpector1, Fabricia H Sugiyama1, Ariel L L Garcia2, Carlos Roque D Correia2, Mukesh M Jotani3, Edward R T Tiekink4.
Abstract
The title compound, C14H17NO4, features an epoxide-O atom fused to a pyrrolidyl ring, the latter having an envelope conformation with the N atom being the flap. The 4-meth-oxy-phenyl group is orthogonal to [dihedral angle = 85.02 (6)°] and lies to the opposite side of the five-membered ring to the epoxide O atom, while the N-bound ethyl ester group (r.m.s. deviation of the five fitted atoms = 0.0187 Å) is twisted with respect to the ring [dihedral angle = 17.23 (9)°]. The most prominent inter-actions in the crystal are of the type methine-C-H⋯O(carbon-yl) and these lead to the formation of linear supra-molecular chains along the c axis; weak benzene-C-H⋯O(epoxide) and methine-C-H⋯O(meth-oxy) inter-actions connect these into a three-dimensional architecture. The analysis of the Hirshfeld surface confirms the presence of C-H⋯O inter-actions in the crystal, but also the dominance of H⋯H dispersion contacts.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; epoxide; pyrrolidyl
Year: 2017 PMID: 28932440 PMCID: PMC5598852 DOI: 10.1107/S2056989017009987
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (III), showing the atom-labelling scheme and displacement ellipsoids at the 35% probability level.
Figure 2The molecular packing in (III): (a) a view of the supramolecular chain sustained by methine-C—H⋯O(carbonyl) interactions shown as orange dashed lines and (b) a view of the unit-cell contents in projection down the c axis, whereby the chains illustrated in (a) are linked by weak benzene-C—H⋯O(epoxide) and methine-C—H⋯O(methoxy) contacts, shown as blue dashed lines.
Figure 3Two views of the Hirshfeld surface for (III) plotted over d norm in the range −0.110 to 1.412 au.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C2—H2⋯O2i | 0.98 | 2.40 | 3.3559 (19) | 165 |
| C13—H13⋯O1ii | 0.93 | 2.68 | 3.456 (2) | 155 |
| C3—H3⋯O4iii | 0.98 | 2.68 | 3.311 (2) | 107 |
Symmetry codes: (i) ; (ii) ; (iii) .
Summary of short inter-atomic contacts (Å) in (III)
| Contact | Distance | Symmetry operation |
|---|---|---|
| C4⋯O4 | 3.167 (2) | −1 + |
| O2⋯H9 | 2.63 |
|
| C13⋯H6 | 2.87 |
|
Figure 4Two views of the Hirshfeld surface for (III) mapped over the calculated electrostatic potential in the range −0.083 to + 0.042 au. The red and blue regions represent negative and positive electrostatic potentials, respectively.
Figure 5View of the Hirshfeld surface for (III) mapped over the electrostatic potential about a reference molecule showing C—H⋯O, C⋯O/O⋯C and short inter-atomic O⋯H/H⋯O contacts with black, sky-blue and white dashed lines, respectively.
Figure 6(a) The full two-dimensional fingerprint plot for (III) and fingerprint plots delineated into (b) H⋯H, (c) O⋯H/H⋯O and (d) C⋯H/H⋯C contacts.
Percentage contributions of inter-atomic contacts to the Hirshfeld surfaces for (III)
| Contact | Percentage contribution |
|---|---|
| H⋯H | 55.2 |
| O⋯H/H⋯O | 29.7 |
| C⋯H/H⋯C | 13.0 |
| C⋯C | 1.1 |
| N⋯H/H⋯N | 0.5 |
| C⋯O/O⋯C | 0.4 |
| O⋯O | 0.1 |
Experimental details
| Crystal data | |
| Chemical formula | C14H17NO4 |
|
| 263.28 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 9.6467 (9), 18.408 (1), 7.8076 (6) |
| β (°) | 102.071 (8) |
|
| 1355.79 (18) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.10 |
| Crystal size (mm) | 0.30 × 0.27 × 0.11 |
| Data collection | |
| Diffractometer | Enraf–Nonius TurboCAD-4 |
| Absorption correction | ψ scan (Blessing, 1995 |
|
| 0.933, 0.990 |
| No. of measured, independent and observed [ | 4187, 3927, 2107 |
|
| 0.028 |
| (sin θ/λ)max (Å−1) | 0.703 |
| Refinement | |
|
| 0.049, 0.147, 1.00 |
| No. of reflections | 3927 |
| No. of parameters | 174 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.17, −0.23 |
Computer programs: CAD-4 EXPRESS (Enraf–Nonius, 1989 ▸), XCAD4 (Harms & Wocadlo, 1995 ▸), SIR2014 (Burla et al., 2015 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), DIAMOND (Brandenburg, 2006 ▸), MarvinSketch (ChemAxon, 2010 ▸) and publCIF (Westrip, 2010 ▸).
| C14H17NO4 | |
| Monoclinic, | Mo |
| Cell parameters from 25 reflections | |
| θ = 11.0–13.6° | |
| µ = 0.10 mm−1 | |
| β = 102.071 (8)° | |
| Irregular, colourless | |
| 0.30 × 0.27 × 0.11 mm |
| Enraf–Nonius TurboCAD-4 diffractometer | |
| non–profiled ω/2τ scans | θmax = 30.0°, θmin = 2.2° |
| Absorption correction: ψ scan (Blessing, 1995) | |
| 4187 measured reflections | |
| 3927 independent reflections | 3 standard reflections every 60 min |
| 2107 reflections with | intensity decay: 1% |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3927 reflections | Δρmax = 0.17 e Å−3 |
| 174 parameters | Δρmin = −0.23 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | −0.19247 (14) | 0.42020 (8) | −0.03045 (18) | 0.0678 (4) | |
| O2 | −0.03454 (14) | 0.36201 (7) | 0.53678 (14) | 0.0565 (3) | |
| O3 | 0.13930 (13) | 0.42869 (6) | 0.45731 (15) | 0.0544 (3) | |
| O4 | 0.56099 (13) | 0.25574 (8) | 0.0389 (2) | 0.0734 (4) | |
| N1 | −0.01106 (14) | 0.36816 (7) | 0.25447 (16) | 0.0467 (3) | |
| C1 | 0.05665 (17) | 0.39804 (9) | 0.1171 (2) | 0.0456 (4) | |
| H1 | 0.0760 | 0.4499 | 0.1378 | 0.055* | |
| C2 | −0.05889 (19) | 0.38771 (10) | −0.0450 (2) | 0.0518 (4) | |
| H2 | −0.0341 | 0.3834 | −0.1601 | 0.062* | |
| C3 | −0.17188 (18) | 0.34308 (11) | −0.0031 (2) | 0.0548 (4) | |
| H3 | −0.2228 | 0.3085 | −0.0893 | 0.066* | |
| C4 | −0.13558 (18) | 0.32331 (10) | 0.1864 (2) | 0.0513 (4) | |
| H4A | −0.2129 | 0.3349 | 0.2438 | 0.062* | |
| H4B | −0.1134 | 0.2720 | 0.2019 | 0.062* | |
| C5 | 0.02590 (17) | 0.38465 (9) | 0.4251 (2) | 0.0438 (4) | |
| C6 | 0.1888 (2) | 0.45044 (11) | 0.6374 (2) | 0.0621 (5) | |
| H6A | 0.2115 | 0.4081 | 0.7119 | 0.075* | |
| H6B | 0.1163 | 0.4783 | 0.6776 | 0.075* | |
| C7 | 0.3173 (3) | 0.49553 (15) | 0.6432 (4) | 0.0945 (8) | |
| H7A | 0.3893 | 0.4668 | 0.6074 | 0.142* | |
| H7B | 0.3517 | 0.5128 | 0.7605 | 0.142* | |
| H7C | 0.2941 | 0.5362 | 0.5656 | 0.142* | |
| C8 | 0.19086 (17) | 0.35884 (9) | 0.10017 (19) | 0.0439 (4) | |
| C9 | 0.19617 (19) | 0.28404 (10) | 0.0936 (3) | 0.0601 (5) | |
| H9 | 0.1162 | 0.2574 | 0.1031 | 0.072* | |
| C10 | 0.31680 (19) | 0.24737 (11) | 0.0733 (3) | 0.0605 (5) | |
| H10 | 0.3177 | 0.1969 | 0.0697 | 0.073* | |
| C11 | 0.43576 (17) | 0.28635 (10) | 0.0583 (2) | 0.0528 (4) | |
| C12 | 0.43222 (19) | 0.36132 (10) | 0.0623 (3) | 0.0594 (5) | |
| H12 | 0.5117 | 0.3878 | 0.0498 | 0.071* | |
| C13 | 0.31168 (18) | 0.39740 (10) | 0.0846 (2) | 0.0529 (4) | |
| H13 | 0.3113 | 0.4479 | 0.0893 | 0.063* | |
| C14 | 0.5733 (2) | 0.17891 (12) | 0.0463 (3) | 0.0757 (6) | |
| H14A | 0.5536 | 0.1618 | 0.1548 | 0.114* | |
| H14B | 0.6678 | 0.1651 | 0.0388 | 0.114* | |
| H14C | 0.5069 | 0.1579 | −0.0497 | 0.114* |
| O1 | 0.0615 (8) | 0.0775 (10) | 0.0667 (8) | 0.0171 (7) | 0.0183 (6) | 0.0127 (7) |
| O2 | 0.0670 (8) | 0.0661 (8) | 0.0413 (6) | −0.0002 (6) | 0.0225 (5) | 0.0039 (6) |
| O3 | 0.0607 (7) | 0.0603 (7) | 0.0425 (6) | −0.0093 (6) | 0.0113 (5) | −0.0074 (5) |
| O4 | 0.0470 (7) | 0.0723 (9) | 0.1044 (11) | −0.0043 (7) | 0.0235 (7) | −0.0145 (8) |
| N1 | 0.0513 (8) | 0.0550 (8) | 0.0367 (6) | −0.0106 (6) | 0.0160 (5) | −0.0021 (6) |
| C1 | 0.0540 (9) | 0.0467 (9) | 0.0398 (8) | −0.0054 (7) | 0.0184 (7) | 0.0018 (7) |
| C2 | 0.0551 (10) | 0.0630 (11) | 0.0397 (8) | 0.0063 (8) | 0.0150 (7) | 0.0046 (7) |
| C3 | 0.0493 (9) | 0.0694 (12) | 0.0464 (9) | 0.0004 (8) | 0.0111 (7) | −0.0061 (8) |
| C4 | 0.0492 (9) | 0.0586 (10) | 0.0490 (9) | −0.0081 (8) | 0.0170 (7) | −0.0026 (8) |
| C5 | 0.0491 (9) | 0.0430 (8) | 0.0409 (8) | 0.0047 (7) | 0.0130 (7) | 0.0008 (6) |
| C6 | 0.0721 (12) | 0.0627 (12) | 0.0483 (10) | −0.0001 (10) | 0.0052 (9) | −0.0143 (9) |
| C7 | 0.0973 (19) | 0.0905 (18) | 0.0904 (17) | −0.0297 (14) | 0.0075 (14) | −0.0280 (14) |
| C8 | 0.0470 (8) | 0.0495 (9) | 0.0368 (7) | −0.0076 (7) | 0.0122 (6) | −0.0006 (7) |
| C9 | 0.0517 (10) | 0.0525 (11) | 0.0820 (13) | −0.0152 (8) | 0.0277 (9) | −0.0069 (9) |
| C10 | 0.0560 (10) | 0.0479 (10) | 0.0829 (14) | −0.0100 (8) | 0.0263 (9) | −0.0104 (9) |
| C11 | 0.0453 (9) | 0.0609 (11) | 0.0523 (9) | −0.0071 (8) | 0.0103 (7) | −0.0104 (8) |
| C12 | 0.0443 (9) | 0.0613 (11) | 0.0734 (12) | −0.0166 (8) | 0.0139 (8) | −0.0026 (9) |
| C13 | 0.0513 (10) | 0.0486 (10) | 0.0587 (10) | −0.0105 (8) | 0.0111 (8) | 0.0003 (8) |
| C14 | 0.0633 (12) | 0.0743 (14) | 0.0884 (15) | 0.0086 (11) | 0.0131 (11) | −0.0168 (12) |
| O1—C3 | 1.443 (2) | C6—C7 | 1.485 (3) |
| O1—C2 | 1.447 (2) | C6—H6A | 0.9700 |
| O2—C5 | 1.2189 (18) | C6—H6B | 0.9700 |
| O3—C5 | 1.342 (2) | C7—H7A | 0.9600 |
| O3—C6 | 1.444 (2) | C7—H7B | 0.9600 |
| O4—C11 | 1.370 (2) | C7—H7C | 0.9600 |
| O4—C14 | 1.419 (3) | C8—C9 | 1.379 (2) |
| N1—C5 | 1.340 (2) | C8—C13 | 1.391 (2) |
| N1—C4 | 1.463 (2) | C9—C10 | 1.383 (2) |
| N1—C1 | 1.4739 (19) | C9—H9 | 0.9300 |
| C1—C8 | 1.512 (2) | C10—C11 | 1.379 (2) |
| C1—C2 | 1.514 (2) | C10—H10 | 0.9300 |
| C1—H1 | 0.9800 | C11—C12 | 1.381 (3) |
| C2—C3 | 1.456 (2) | C12—C13 | 1.381 (3) |
| C2—H2 | 0.9800 | C12—H12 | 0.9300 |
| C3—C4 | 1.493 (2) | C13—H13 | 0.9300 |
| C3—H3 | 0.9800 | C14—H14A | 0.9600 |
| C4—H4A | 0.9700 | C14—H14B | 0.9600 |
| C4—H4B | 0.9700 | C14—H14C | 0.9600 |
| C3—O1—C2 | 60.50 (11) | C7—C6—H6A | 110.4 |
| C5—O3—C6 | 116.11 (13) | O3—C6—H6B | 110.4 |
| C11—O4—C14 | 118.28 (15) | C7—C6—H6B | 110.4 |
| C5—N1—C4 | 121.09 (13) | H6A—C6—H6B | 108.6 |
| C5—N1—C1 | 124.94 (14) | C6—C7—H7A | 109.5 |
| C4—N1—C1 | 113.68 (12) | C6—C7—H7B | 109.5 |
| N1—C1—C8 | 113.79 (13) | H7A—C7—H7B | 109.5 |
| N1—C1—C2 | 101.59 (13) | C6—C7—H7C | 109.5 |
| C8—C1—C2 | 111.17 (13) | H7A—C7—H7C | 109.5 |
| N1—C1—H1 | 110.0 | H7B—C7—H7C | 109.5 |
| C8—C1—H1 | 110.0 | C9—C8—C13 | 117.89 (16) |
| C2—C1—H1 | 110.0 | C9—C8—C1 | 121.25 (14) |
| O1—C2—C3 | 59.63 (11) | C13—C8—C1 | 120.82 (15) |
| O1—C2—C1 | 113.23 (14) | C8—C9—C10 | 122.02 (16) |
| C3—C2—C1 | 109.74 (14) | C8—C9—H9 | 119.0 |
| O1—C2—H2 | 119.9 | C10—C9—H9 | 119.0 |
| C3—C2—H2 | 119.9 | C11—C10—C9 | 119.40 (18) |
| C1—C2—H2 | 119.9 | C11—C10—H10 | 120.3 |
| O1—C3—C2 | 59.87 (11) | C9—C10—H10 | 120.3 |
| O1—C3—C4 | 112.52 (15) | O4—C11—C10 | 124.34 (17) |
| C2—C3—C4 | 109.22 (14) | O4—C11—C12 | 116.11 (15) |
| O1—C3—H3 | 120.2 | C10—C11—C12 | 119.55 (17) |
| C2—C3—H3 | 120.2 | C11—C12—C13 | 120.58 (16) |
| C4—C3—H3 | 120.2 | C11—C12—H12 | 119.7 |
| N1—C4—C3 | 103.12 (13) | C13—C12—H12 | 119.7 |
| N1—C4—H4A | 111.1 | C12—C13—C8 | 120.55 (17) |
| C3—C4—H4A | 111.1 | C12—C13—H13 | 119.7 |
| N1—C4—H4B | 111.1 | C8—C13—H13 | 119.7 |
| C3—C4—H4B | 111.1 | O4—C14—H14A | 109.5 |
| H4A—C4—H4B | 109.1 | O4—C14—H14B | 109.5 |
| O2—C5—N1 | 124.47 (16) | H14A—C14—H14B | 109.5 |
| O2—C5—O3 | 124.44 (15) | O4—C14—H14C | 109.5 |
| N1—C5—O3 | 111.09 (13) | H14A—C14—H14C | 109.5 |
| O3—C6—C7 | 106.77 (17) | H14B—C14—H14C | 109.5 |
| O3—C6—H6A | 110.4 | ||
| C5—N1—C1—C8 | 83.1 (2) | C1—N1—C5—O3 | −4.0 (2) |
| C4—N1—C1—C8 | −103.11 (16) | C6—O3—C5—O2 | −1.0 (2) |
| C5—N1—C1—C2 | −157.38 (15) | C6—O3—C5—N1 | 179.79 (14) |
| C4—N1—C1—C2 | 16.45 (18) | C5—O3—C6—C7 | 177.42 (17) |
| C3—O1—C2—C1 | −100.05 (16) | N1—C1—C8—C9 | 47.4 (2) |
| N1—C1—C2—O1 | 54.73 (17) | C2—C1—C8—C9 | −66.5 (2) |
| C8—C1—C2—O1 | 176.13 (13) | N1—C1—C8—C13 | −134.82 (15) |
| N1—C1—C2—C3 | −9.78 (18) | C2—C1—C8—C13 | 111.22 (17) |
| C8—C1—C2—C3 | 111.62 (15) | C13—C8—C9—C10 | 0.4 (3) |
| C2—O1—C3—C4 | 99.87 (16) | C1—C8—C9—C10 | 178.17 (16) |
| C1—C2—C3—O1 | 105.99 (15) | C8—C9—C10—C11 | −0.3 (3) |
| O1—C2—C3—C4 | −105.47 (16) | C14—O4—C11—C10 | −4.4 (3) |
| C1—C2—C3—C4 | 0.5 (2) | C14—O4—C11—C12 | 175.67 (18) |
| C5—N1—C4—C3 | 157.71 (15) | C9—C10—C11—O4 | 179.54 (18) |
| C1—N1—C4—C3 | −16.38 (18) | C9—C10—C11—C12 | −0.6 (3) |
| O1—C3—C4—N1 | −55.38 (17) | O4—C11—C12—C13 | −178.80 (16) |
| C2—C3—C4—N1 | 9.10 (19) | C10—C11—C12—C13 | 1.3 (3) |
| C4—N1—C5—O2 | 3.4 (3) | C11—C12—C13—C8 | −1.2 (3) |
| C1—N1—C5—O2 | 176.78 (15) | C9—C8—C13—C12 | 0.4 (3) |
| C4—N1—C5—O3 | −177.35 (14) | C1—C8—C13—C12 | −177.45 (15) |
| H··· | ||||
| C2—H2···O2i | 0.98 | 2.40 | 3.3559 (19) | 165 |
| C13—H13···O1ii | 0.93 | 2.68 | 3.456 (2) | 155 |
| C3—H3···O4iii | 0.98 | 2.68 | 3.311 (2) | 107 |