Literature DB >> 28929407

Gibbs free energy as a measure of complexity correlates with time within C. elegans embryonic development.

Samuel H McGuire1, Edward A Rietman1, Hava Siegelmann1, Jack A Tuszynski2,3.   

Abstract

We investigate free energy behavior in the nematode Caenorhabditis elegans during embryonic development. Our approach utilizes publicly available gene expression data, which gives us a picture of developmental changes in protein concentration and, resultantly, chemical potential and free energy. Our results indicate a clear global relationship between Gibbs free energy and time spent in development and provide thermodynamic indicators of the large-scale biological events of cell division and differentiation.

Entities:  

Keywords:  Development; Entropy; Gibbs free energy; Protein-protein interaction networks

Mesh：

Year:  2017        PMID： 28929407      PMCID： PMC5696307          DOI： 10.1007/s10867-017-9469-0

Source DB:  PubMed          Journal:  J Biol Phys        ISSN： 0092-0606            Impact factor:   1.365


  15 in total

1.  Developmental milestones punctuate gene expression in the Caenorhabditis embryo.

Authors:  Michal Levin; Tamar Hashimshony; Florian Wagner; Itai Yanai
Journal:  Dev Cell       Date:  2012-05-03       Impact factor: 12.270

Review 2.  Correlation of mRNA and protein in complex biological samples.

Authors:  Tobias Maier; Marc Güell; Luis Serrano
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

3.  The life cycle of the nematode Caenorhabditis elegans. I. Wild-type growth and reproduction.

Authors:  L Byerly; R C Cassada; R L Russell
Journal:  Dev Biol       Date:  1976-07-01       Impact factor: 3.582

Review 4.  Interactome networks and human disease.

Authors:  Marc Vidal; Michael E Cusick; Albert-László Barabási
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

5.  Mass-spectrometry-based draft of the human proteome.

Authors:  Mathias Wilhelm; Judith Schlegl; Hannes Hahne; Amin Moghaddas Gholami; Marcus Lieberenz; Mikhail M Savitski; Emanuel Ziegler; Lars Butzmann; Siegfried Gessulat; Harald Marx; Toby Mathieson; Simone Lemeer; Karsten Schnatbaum; Ulf Reimer; Holger Wenschuh; Martin Mollenhauer; Julia Slotta-Huspenina; Joos-Hendrik Boese; Marcus Bantscheff; Anja Gerstmair; Franz Faerber; Bernhard Kuster
Journal:  Nature       Date:  2014-05-29       Impact factor: 49.962

Review 6.  A Transparent window into biology: A primer on Caenorhabditis elegans.

Authors:  Ann K Corsi; Bruce Wightman; Martin Chalfie
Journal:  WormBook       Date:  2015-06-18

7.  Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.

Authors:  Nicolas Simonis; Jean-François Rual; Anne-Ruxandra Carvunis; Murat Tasan; Irma Lemmens; Tomoko Hirozane-Kishikawa; Tong Hao; Julie M Sahalie; Kavitha Venkatesan; Fana Gebreab; Sebiha Cevik; Niels Klitgord; Changyu Fan; Pascal Braun; Ning Li; Nono Ayivi-Guedehoussou; Elizabeth Dann; Nicolas Bertin; David Szeto; Amélie Dricot; Muhammed A Yildirim; Chenwei Lin; Anne-Sophie de Smet; Huey-Ling Kao; Christophe Simon; Alex Smolyar; Jin Sook Ahn; Muneesh Tewari; Mike Boxem; Stuart Milstein; Haiyuan Yu; Matija Dreze; Jean Vandenhaute; Kristin C Gunsalus; Michael E Cusick; David E Hill; Jan Tavernier; Frederick P Roth; Marc Vidal
Journal:  Nat Methods       Date:  2009-01       Impact factor: 28.547

8.  The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells.

Authors:  Javier Munoz; Teck Y Low; Yee J Kok; Angela Chin; Christian K Frese; Vanessa Ding; Andre Choo; Albert J R Heck
Journal:  Mol Syst Biol       Date:  2011-11-22       Impact factor: 11.429

9.  Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs.

Authors:  Arne H Smits; Rik G H Lindeboom; Matteo Perino; Simon J van Heeringen; Gert Jan C Veenstra; Michiel Vermeulen
Journal:  Nucleic Acids Res       Date:  2014-07-23       Impact factor: 16.971

10.  The mid-developmental transition and the evolution of animal body plans.

Authors:  Michal Levin; Leon Anavy; Alison G Cole; Eitan Winter; Natalia Mostov; Sally Khair; Naftalie Senderovich; Ekaterina Kovalev; David H Silver; Martin Feder; Selene L Fernandez-Valverde; Nagayasu Nakanishi; David Simmons; Oleg Simakov; Tomas Larsson; Shang-Yun Liu; Ayelet Jerafi-Vider; Karina Yaniv; Joseph F Ryan; Mark Q Martindale; Jochen C Rink; Detlev Arendt; Sandie M Degnan; Bernard M Degnan; Tamar Hashimshony; Itai Yanai
Journal:  Nature       Date:  2016-02-17       Impact factor: 49.962
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  1 in total

1.  Cooking up the perfect insect: Aristotle's transformational idea about the complete metamorphosis of insects.

Authors:  Stuart Reynolds
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-08-26       Impact factor: 6.237
  1 in total

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