Literature DB >> 28925811

It's fun to transcribe with Fun30: A model for nucleosome dynamics during RNA polymerase II-mediated elongation.

Junwoo Lee1, Eun Shik Choi1, Daeyoup Lee1.   

Abstract

The ability of elongating RNA polymerase II (RNAPII) to regulate the nucleosome barrier is poorly understood because we do not know enough about the involved factors and we lack a conceptual framework to model this process. Our group recently identified the conserved Fun30/SMARCAD1 family chromatin-remodeling factor, Fun30Fft3, as being critical for relieving the nucleosome barrier during RNAPII-mediated elongation, and proposed a model illustrating how Fun30Fft3 may contribute to nucleosome disassembly during RNAPII-mediated elongation. Here, we present a model that describes nucleosome dynamics during RNAPII-mediated elongation in mathematical terms and addresses the involvement of Fun30Fft3 in this process.

Entities:  

Keywords:  Fun30; RNAPII elongation; chromatin remodeler; histone chaperone FACT; nucleosome barrier; nucleosome disassembly

Mesh:

Substances:

Year:  2017        PMID: 28925811      PMCID: PMC5834224          DOI: 10.1080/21541264.2017.1356434

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  52 in total

1.  Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

Authors:  M G Izban; D S Luse
Journal:  Genes Dev       Date:  1991-04       Impact factor: 11.361

2.  NuA4 lysine acetyltransferase Esa1 is targeted to coding regions and stimulates transcription elongation with Gcn5.

Authors:  Daniel S Ginsburg; Chhabi K Govind; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2009-10-12       Impact factor: 4.272

3.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

4.  Transcription elongation factors repress transcription initiation from cryptic sites.

Authors:  Craig D Kaplan; Lisa Laprade; Fred Winston
Journal:  Science       Date:  2003-08-22       Impact factor: 47.728

5.  Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes.

Authors:  Swaminathan Venkatesh; Michaela Smolle; Hua Li; Madelaine M Gogol; Malika Saint; Shambhu Kumar; Krishnamurthy Natarajan; Jerry L Workman
Journal:  Nature       Date:  2012-08-22       Impact factor: 49.962

6.  FACT Disrupts Nucleosome Structure by Binding H2A-H2B with Conserved Peptide Motifs.

Authors:  David J Kemble; Laura L McCullough; Frank G Whitby; Tim Formosa; Christopher P Hill
Journal:  Mol Cell       Date:  2015-10-08       Impact factor: 17.970

7.  A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization.

Authors:  Triantaffyllos Gkikopoulos; Pieta Schofield; Vijender Singh; Marina Pinskaya; Jane Mellor; Michaela Smolle; Jerry L Workman; Geoffrey J Barton; Tom Owen-Hughes
Journal:  Science       Date:  2011-09-23       Impact factor: 47.728

8.  Factors that promote H3 chromatin integrity during transcription prevent promiscuous deposition of CENP-A(Cnp1) in fission yeast.

Authors:  Eun Shik Choi; Annelie Strålfors; Sandra Catania; Araceli G Castillo; J Peter Svensson; Alison L Pidoux; Karl Ekwall; Robin C Allshire
Journal:  PLoS Genet       Date:  2012-09-20       Impact factor: 5.917

9.  A nucleosome turnover map reveals that the stability of histone H4 Lys20 methylation depends on histone recycling in transcribed chromatin.

Authors:  J Peter Svensson; Manu Shukla; Victoria Menendez-Benito; Ulrika Norman-Axelsson; Pauline Audergon; Indranil Sinha; Jason C Tanny; Robin C Allshire; Karl Ekwall
Journal:  Genome Res       Date:  2015-03-16       Impact factor: 9.043

10.  The Fun30 nucleosome remodeller promotes resection of DNA double-strand break ends.

Authors:  Xuefeng Chen; Dandan Cui; Alma Papusha; Xiaotian Zhang; Chia-Dwo Chu; Jiangwu Tang; Kaifu Chen; Xuewen Pan; Grzegorz Ira
Journal:  Nature       Date:  2012-09-09       Impact factor: 49.962

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  1 in total

1.  Fun30 and Rtt109 Mediate Epigenetic Regulation of the DNA Damage Response Pathway in C. albicans.

Authors:  Prashant Kumar Maurya; Pramita Garai; Kaveri Goel; Himanshu Bhatt; Anindita Dutta; Aarti Goyal; Sakshi Dewasthale; Meghna Gupta; Dominic Thangminlen Haokip; Sanju Barik; Rohini Muthuswami
Journal:  J Fungi (Basel)       Date:  2022-05-25
  1 in total

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