Literature DB >> 28923279

Needs and opportunities in bio-design automation: four areas for focus.

Evan Appleton1, Douglas Densmore2, Curtis Madsen2, Nicholas Roehner3.   

Abstract

Bio-design automation (BDA) is an emerging field focused on computer-aided design, engineering principles, and automated manufacturing of biological systems. Here we discuss some outstanding challenges for bio-design that can be addressed by developing new tools for combinatorial engineering, equipment interfacing, next-generation sequencing, and workflow integration. These four areas, while not an exhaustive list of those that need to be addressed, could yield advances in bio-design, laboratory automation, and biometrology.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2017        PMID: 28923279     DOI: 10.1016/j.cbpa.2017.08.005

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  6 in total

1.  Standardizing Automated DNA Assembly: Best Practices, Metrics, and Protocols Using Robots.

Authors:  David I Walsh; Marilene Pavan; Luis Ortiz; Scott Wick; Johanna Bobrow; Nicholas J Guido; Sarah Leinicke; Dany Fu; Shreya Pandit; Lucy Qin; Peter A Carr; Douglas Densmore
Journal:  SLAS Technol       Date:  2019-02-15       Impact factor: 3.047

2.  AutoESD: a web tool for automatic editing sequence design for genetic manipulation of microorganisms.

Authors:  Yi Yang; Yufeng Mao; Ruoyu Wang; Haoran Li; Ye Liu; Haijiao Cheng; Zhenkun Shi; Yu Wang; Meng Wang; Ping Zheng; Xiaoping Liao; Hongwu Ma
Journal:  Nucleic Acids Res       Date:  2022-05-26       Impact factor: 19.160

Review 3.  Organizing genome engineering for the gigabase scale.

Authors:  Bryan A Bartley; Jacob Beal; Jonathan R Karr; Elizabeth A Strychalski
Journal:  Nat Commun       Date:  2020-02-04       Impact factor: 14.919

4.  Enabling high-throughput biology with flexible open-source automation.

Authors:  Emma J Chory; Dana W Gretton; Erika A DeBenedictis; Kevin M Esvelt
Journal:  Mol Syst Biol       Date:  2021-03       Impact factor: 11.429

5.  Acoustofluidic medium exchange for preparation of electrocompetent bacteria using channel wall trapping.

Authors:  M S Gerlt; P Ruppen; M Leuthner; S Panke; J Dual
Journal:  Lab Chip       Date:  2021-11-09       Impact factor: 6.799

Review 6.  Nobel Turing Challenge: creating the engine for scientific discovery.

Authors:  Hiroaki Kitano
Journal:  NPJ Syst Biol Appl       Date:  2021-06-18
  6 in total

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