Literature DB >> 28920101

Potential therapeutic targets in Nrf2-dependent protection against neonatal respiratory distress disease predicted by cDNA microarray analysis and bioinformatics tools.

Hye-Youn Cho1, Xuting Wang2, Jianying Li3,4, Douglas A Bell2, Steven R Kleeberger1.   

Abstract

Hyperoxia exposure of newborn rodents has served as a model for bronchopulmonary dysplasia (BPD) phenotypes found in a sub-population of human premature infants. We previously demonstrated that Nrf2 modulates molecular events during saccular-to-alveolar lung maturation and also has a protective role in the pathogenesis of hyperoxia-induced acute lung injury, mortality, arrest of saccular-to-alveolar transition, and lung injury, using Nrf2-deficient and wild-type neonate mice. In this review, we describe how whole-genome transcriptome analyses can identify the means through which Nrf2 transcriptionally modulates organ injury and morphology, cellular growth/proliferation, vasculature development, and immune response during BPD-like pathogenesis. We illustrate how recently developed bioinformatics tools can be used to identify sets of Nrf2-dependently modulated genes in the BPD model, and elucidate direct Nrf2 downstream targets and chemicals/drugs that may act on them. These approaches will provide significant insights into promising therapeutic agents for Nrf2-dependent treatments of complications of preterm birth like BPD.

Entities:  

Keywords:  Bronchopulmonary dysplasia; LINCS1000CDS2 search engine; acute lung injury; antioxidant; canonical; inflammation; mRNA expression; pathway analysis; prematurity

Year:  2016        PMID: 28920101      PMCID: PMC5596881          DOI: 10.1016/j.cotox.2016.10.006

Source DB:  PubMed          Journal:  Curr Opin Toxicol        ISSN: 2468-2020


  40 in total

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Authors:  Chun Shik Park; Ye Shen; Andrew Lewis; H Daniel Lacorazza
Journal:  J Leukoc Biol       Date:  2016-02-23       Impact factor: 4.962

2.  Identification of polymorphic antioxidant response elements in the human genome.

Authors:  Xuting Wang; Daniel J Tomso; Brian N Chorley; Hye-Youn Cho; Vivian G Cheung; Steven R Kleeberger; Douglas A Bell
Journal:  Hum Mol Genet       Date:  2007-04-04       Impact factor: 6.150

Review 3.  Understanding the role of ETS-mediated gene regulation in complex biological processes.

Authors:  Victoria J Findlay; Amanda C LaRue; David P Turner; Patricia M Watson; Dennis K Watson
Journal:  Adv Cancer Res       Date:  2013       Impact factor: 6.242

Review 4.  Nuclear Factor Erythroid-2 Like 1 (NFE2L1): Structure, function and regulation.

Authors:  Hyun Min Kim; Jeong Woo Han; Jefferson Y Chan
Journal:  Gene       Date:  2016-03-03       Impact factor: 3.688

5.  Unique cistrome defined as CsMBE is strictly required for Nrf2-sMaf heterodimer function in cytoprotection.

Authors:  Akihito Otsuki; Mikiko Suzuki; Fumiki Katsuoka; Kouhei Tsuchida; Hiromi Suda; Masanobu Morita; Ritsuko Shimizu; Masayuki Yamamoto
Journal:  Free Radic Biol Med       Date:  2015-12-08       Impact factor: 7.376

6.  A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals.

Authors:  Manuel Garber; Nir Yosef; Alon Goren; Raktima Raychowdhury; Anne Thielke; Mitchell Guttman; James Robinson; Brian Minie; Nicolas Chevrier; Zohar Itzhaki; Ronnie Blecher-Gonen; Chamutal Bornstein; Daniela Amann-Zalcenstein; Assaf Weiner; Dennis Friedrich; James Meldrim; Oren Ram; Christine Cheng; Andreas Gnirke; Sheila Fisher; Nir Friedman; Bang Wong; Bradley E Bernstein; Chad Nusbaum; Nir Hacohen; Aviv Regev; Ido Amit
Journal:  Mol Cell       Date:  2012-08-30       Impact factor: 17.970

7.  MEME-ChIP: motif analysis of large DNA datasets.

Authors:  Philip Machanick; Timothy L Bailey
Journal:  Bioinformatics       Date:  2011-04-12       Impact factor: 6.937

8.  LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.

Authors:  Qiaonan Duan; Corey Flynn; Mario Niepel; Marc Hafner; Jeremy L Muhlich; Nicolas F Fernandez; Andrew D Rouillard; Christopher M Tan; Edward Y Chen; Todd R Golub; Peter K Sorger; Aravind Subramanian; Avi Ma'ayan
Journal:  Nucleic Acids Res       Date:  2014-06-06       Impact factor: 16.971

9.  Identification of novel NRF2-regulated genes by ChIP-Seq: influence on retinoid X receptor alpha.

Authors:  Brian N Chorley; Michelle R Campbell; Xuting Wang; Mehmet Karaca; Deepa Sambandan; Fatu Bangura; Peng Xue; Jingbo Pi; Steven R Kleeberger; Douglas A Bell
Journal:  Nucleic Acids Res       Date:  2012-05-11       Impact factor: 16.971

Review 10.  Antioxidant strategies and respiratory disease of the preterm newborn: an update.

Authors:  Chiara Poggi; Carlo Dani
Journal:  Oxid Med Cell Longev       Date:  2014-04-07       Impact factor: 6.543

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  7 in total

Review 1.  Oxygen Toxicity in the Neonate: Thinking Beyond the Balance.

Authors:  Trent E Tipple; Namasivayam Ambalavanan
Journal:  Clin Perinatol       Date:  2019-06-08       Impact factor: 3.430

2.  N-acetyl-lysyltyrosylcysteine amide, a novel systems pharmacology agent, reduces bronchopulmonary dysplasia in hyperoxic neonatal rat pups.

Authors:  Ru-Jeng Teng; Xigang Jing; Dustin P Martin; Neil Hogg; Aaron Haefke; Girija G Konduri; Billy W Day; Stephen Naylor; Kirkwood A Pritchard
Journal:  Free Radic Biol Med       Date:  2021-02-17       Impact factor: 7.376

3.  Auranofin-Mediated NRF2 Induction Attenuates Interleukin 1 Beta Expression in Alveolar Macrophages.

Authors:  Stephanie B Wall; Rui Li; Brittany Butler; Ashley R Burg; Hubert M Tse; Jennifer L Larson-Casey; A Brent Carter; Clyde J Wright; Lynette K Rogers; Trent E Tipple
Journal:  Antioxidants (Basel)       Date:  2021-04-21

4.  Ambient particulate matter attenuates Sirtuin1 and augments SREBP1-PIR axis to induce human pulmonary fibroblast inflammation: molecular mechanism of microenvironment associated with COPD.

Authors:  Chia-Ping Tien; Chia-Hung Chen; Wen-Yuan Lin; Chiu-Shong Liu; Ko-Jiunn Liu; Michael Hsiao; Yu-Chan Chang; Shih-Chieh Hung
Journal:  Aging (Albany NY)       Date:  2019-07-12       Impact factor: 5.682

5.  NRF2 Alters Mitochondrial Gene Expression in Neonate Mice Exposed to Hyperoxia.

Authors:  Heather L Vellers; Hye-Youn Cho; Wesley Gladwell; Kevin Gerrish; Janine H Santos; Gaston Ofman; Laura Miller-DeGraff; T Beth Mahler; Steven R Kleeberger
Journal:  Antioxidants (Basel)       Date:  2022-04-11

6.  The expression of miR-125b in Nrf2-silenced A549 cells exposed to hyperoxia and its relationship with apoptosis.

Authors:  Xiaoyue Zhang; Xiaoyun Chu; Xiaohui Gong; Huilin Zhou; Cheng Cai
Journal:  J Cell Mol Med       Date:  2019-11-12       Impact factor: 5.310

7.  Murine Neonatal Oxidant Lung Injury: NRF2-Dependent Predisposition to Adulthood Respiratory Viral Infection and Protection by Maternal Antioxidant.

Authors:  Hye-Youn Cho; Laura Miller-DeGraff; Ligon A Perrow; Wesley Gladwell; Vijayalakshmi Panduri; Fred B Lih; Steven R Kleeberger
Journal:  Antioxidants (Basel)       Date:  2021-11-24
  7 in total

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