Literature DB >> 28919242

Uncovering novel repositioning opportunities using the Open Targets platform.

Mugdha Khaladkar1, Gautier Koscielny2, Samiul Hasan3, Pankaj Agarwal1, Ian Dunham4, Deepak Rajpal1, Philippe Sanseau5.   

Abstract

The recently developed Open Targets platform consolidates a wide range of comprehensive evidence associating known and potential drug targets with human diseases. We have harnessed the integrated data from this platform for novel drug repositioning opportunities. Our computational workflow systematically mines data from various evidence categories and presents potential repositioning opportunities for drugs that are marketed or being investigated in ongoing human clinical trials, based on evidence strength on target-disease pairing. We classified these novel target-disease opportunities in several ways: (i) number of independent counts of evidence; (ii) broad therapy area of origin; and (iii) repositioning within or across therapy areas. Finally, we elaborate on one example that was identified by this approach.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28919242     DOI: 10.1016/j.drudis.2017.09.007

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  9 in total

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Journal:  Curr Issues Mol Biol       Date:  2022-04-15       Impact factor: 2.976

2.  StarGazer: A Hybrid Intelligence Platform for Drug Target Prioritization and Digital Drug Repositioning Using Streamlit.

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Journal:  Front Genet       Date:  2022-05-31       Impact factor: 4.772

3.  Empowering the discovery of novel target-disease associations via machine learning approaches in the open targets platform.

Authors:  Yingnan Han; Katherine Klinger; Deepak K Rajpal; Cheng Zhu; Erin Teeple
Journal:  BMC Bioinformatics       Date:  2022-06-16       Impact factor: 3.307

4.  The European Bioinformatics Institute in 2017: data coordination and integration.

Authors:  Charles E Cook; Mary T Bergman; Guy Cochrane; Rolf Apweiler; Ewan Birney
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

5.  Learning Opportunities for Drug Repositioning via GWAS and PheWAS Findings.

Authors:  Wen Yin; Cheng Gao; Yaomin Xu; Bingshan Li; Douglas M Ruderfer; You Chen
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2018-05-18

6.  Connecting genetics and gene expression data for target prioritisation and drug repositioning.

Authors:  Enrico Ferrero; Pankaj Agarwal
Journal:  BioData Min       Date:  2018-05-31       Impact factor: 2.522

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Authors:  Kai-Tun Chang; Hsing-Ju Wu; Chien-Wei Liu; Chia-Ying Li; Hung-Yu Lin
Journal:  Int J Mol Sci       Date:  2022-02-18       Impact factor: 5.923

8.  Drug repurposing: a systematic review on root causes, barriers and facilitators.

Authors:  Nithya Krishnamurthy; Alyssa A Grimshaw; Sydney A Axson; Sung Hee Choe; Jennifer E Miller
Journal:  BMC Health Serv Res       Date:  2022-07-29       Impact factor: 2.908

9.  Unraveling the Catha edulis Extract Effects on the Cellular and Molecular Signaling in SKOV3 Cells.

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Journal:  Front Pharmacol       Date:  2021-05-10       Impact factor: 5.810

  9 in total

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