Literature DB >> 28916730

Reply to Plüss et al.: The strength of PEMapper/PECaller lies in unbiased calling using large sample sizes.

H Richard Johnston1,2, Pankaj Chopra1, Thomas S Wingo1,3,4, Viren Patel1, Michael P Epstein1, Jennifer G Mulle1,5, Stephen T Warren6,7,8, Michael E Zwick6, David J Cutler6.   

Abstract

Mesh：

Year:  2017        PMID： 28916730      PMCID： PMC5635938          DOI： 10.1073/pnas.1714535114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  5 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

2.  Need for speed in accurate whole-genome data analysis: GENALICE MAP challenges BWA/GATK more than PEMapper/PECaller and Isaac.

Authors:  Michel Plüss; Anna M Kopps; Irene Keller; Janine Meienberg; Sylvan M Caspar; Nicolo Dubacher; Rémy Bruggmann; Manfred Vogel; Gabor Matyas
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-15       Impact factor: 11.205

3.  A framework for variation discovery and genotyping using next-generation DNA sequencing data.

Authors:  Mark A DePristo; Eric Banks; Ryan Poplin; Kiran V Garimella; Jared R Maguire; Christopher Hartl; Anthony A Philippakis; Guillermo del Angel; Manuel A Rivas; Matt Hanna; Aaron McKenna; Tim J Fennell; Andrew M Kernytsky; Andrey Y Sivachenko; Kristian Cibulskis; Stacey B Gabriel; David Altshuler; Mark J Daly
Journal:  Nat Genet       Date:  2011-04-10       Impact factor: 38.330

4.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

5.  PEMapper and PECaller provide a simplified approach to whole-genome sequencing.

Authors:  H Richard Johnston; Pankaj Chopra; Thomas S Wingo; Viren Patel; Michael P Epstein; Jennifer G Mulle; Stephen T Warren; Michael E Zwick; David J Cutler
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205
  5 in total

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