| Literature DB >> 28915661 |
Bing Niu1,2, Mengying Zhang1, Pu Du3, Li Jiang1, Rui Qin4, Qiang Su1, Fuxue Chen1, Dongshu Du1,5, Yilai Shu6, Kuo-Chen Chou7,2.
Abstract
Being a neurodegenerative disorder, Alzheimer's disease (AD) is the one of the most terrible diseases. And acetylcholinesterase (AChE) is considered as an important target for treating AD. Acetylcholinesterase inhibitors (AChEI) are considered to be one of the effective drugs for the treatment of AD. The aim of this study is to find a novel potential AChEI as a drug for the treatment of AD. In this study, instead of using the synthetic compounds, we used those extracted from plants to investigate the interaction between floribundiquinone B (FB) and AChE by means of both the experimental approach such as fluorescence spectra, ultraviolet-visible (UV-vis) absorption spectrometry, circular dichroism (CD) and the theoretical approaches such as molecular docking. The findings reported here have provided many useful clues and hints for designing more effective and less toxic drugs against Alzheimer's disease.Entities:
Keywords: Alzheimer’s disease (AD); acetylcholinesterase (AChE); floribundiquinone B (FB); fluorescence quenching; plant inhibitor
Year: 2017 PMID: 28915661 PMCID: PMC5593632 DOI: 10.18632/oncotarget.19169
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Figure 1Molecular structures of FB
Figure 2The fluorescence emission spectra of AChE-FB with excitation wavelength of 230 nm (A) and 280 nm (B). CAChE = 5 × 10−8M,CFB,a→i: 0, 0.14, 0.29, 0.43, 0.57, 0.71, 0.86, 1 and 1.14 × 10−6M; CFB,a→c: 0, 0.14, and 0.29 × 10−6M; T = 303 K.
The quenching constant Ksv and correlation coefficient of AChE
| T(K) | Ra | ||
|---|---|---|---|
| 298 | 22.84 | 22.84 | 0.997 |
| 303 | 20.97 | 20.97 | 0.994 |
| 308 | 19.11 | 19.11 | 0.995 |
Ra is the linear correlated coefficient.
The binding sites (n) and the binding constant (K) of the inaction of AChE and FB
| T(K) | Ra | ||
|---|---|---|---|
| 298 | 22.47 | 1.02 | 0.994 |
| 303 | 19.19 | 1.04 | 0.998 |
| 308 | 14.72 | 1.10 | 0.998 |
Ra is the linear correlated coefficient.
Figure 3Overlap of the fluorescence spectra of AChE (A) and the absorption spectrum of FB (B).
Figure 4Three-dimensional fluorescence spectra contour maps of AChE (A) and the FB-AChE system (B), the CD spectra (C) of AChE (A) and FB-AChE (B) System.
The content of different secondary structures of AChE obtaining by CONTINLL algorithm
| Compounds | Trn (%) | Unrd (%) | ||||
|---|---|---|---|---|---|---|
| AChE | 0.3 | 5.2 | 23.9 | 12.8 | 22.6 | 35.2 |
| AChE+FB | 0.9 | 5.8 | 21.4 | 12.6 | 23.1 | 36.2 |
H(r): Regular α- helical structure; H(d): Irregular α- helical structure; S(r): Regular β-sheet structure; S(d): Irregular β-folded structure; Trn: β- turn structure; Unrd: Random coil structure.
Figure 5The structure of FB before (A) and after (B) optimization in SYBYL-X-2.0. The active pocket of AChE (C) and the results of the molecular docking (D). In Figure 5C, the ligand is shown in green and the secondary structure of protein is shown in yellow, blue and red ribbon. In Figure 5D, hydrogen bonding depicted in yellow dashed lines.
The experimental pIC50, predicted pIC50, R1, R2 values of TopomerCoMFA model
| Compounds | Exp | Pred | R1 | R2 |
|---|---|---|---|---|
| Training dataset | ||||
| 1 | 8.97 | 9.41 | 1.47 | 2.17 |
| 2 | 8.59 | 8.56 | 1.47 | 1.32 |
| 3 | 8.67 | 8.46 | 0.53 | 2.17 |
| 4 | 9.06 | 8.93 | 0.53 | 2.63 |
| 5 | 8.39 | 8.35 | 0.53 | 2.05 |
| 6 | 9.49 | 9.48 | −2.09 | 5.81 |
| 7 | 9.52 | 9.46 | −2.09 | 5.79 |
| 8 | 5.50 | 5.01 | −2.09 | 1.34 |
| 9 | 3.25 | 3.51 | −2.09 | −0.17 |
| 10 | 2.98 | 3.01 | −2.09 | −0.67 |
| 11 | 3.23 | 3.79 | −2.09 | 0.12 |
| 12 | 3.36 | 3.86 | −2.09 | 0.19 |
| 13 | 3.44 | 3.33 | −2.09 | −0.34 |
| 14 | 5.11 | 4.98 | −0.83 | 0.06 |
| 15 | 3.04 | 2.89 | −2.09 | −0.79 |
| 16 | 3.20 | 3.35 | −2.09 | −0.32 |
| 17 | 3.41 | 3.30 | −2.09 | −0.37 |
| 18 | 3.82 | 3.69 | −2.09 | 0.02 |
| 19 | 4.99 | 5.03 | −2.09 | 1.36 |
| 20 | 5.54 | 5.44 | −2.09 | 1.76 |
| 21 | 5.11 | 4.74 | −2.09 | 1.05 |
| 22 | 5.20 | 4.91 | −2.09 | 1.24 |
| 23 | 5.57 | 5.60 | −2.09 | 1.92 |
| 24 | 7.39 | 7.31 | 1.05 | 0.49 |
| 25 | 8.29 | 8.35 | 0.92 | 1.66 |
| 26 | 8.28 | 8.25 | 0.92 | 1.56 |
| 27 | 8.25 | 8.17 | 0.92 | 1.49 |
| 28 | 7.77 | 7.92 | 0.92 | 1.23 |
| 29 | 7.05 | 7.09 | 0.92 | 0.40 |
| 30 | 7.29 | 7.18 | 0.92 | 0.49 |
| 31 | 7.58 | 7.78 | 0.10 | 1.91 |
| 32 | 7.68 | 7.85 | 0.10 | 1.99 |
| 33 | 7.91 | 7.97 | −2.09 | 4.29 |
| 34 | 7.93 | 7.74 | −2.09 | 4.06 |
| 35 | 8.17 | 8.13 | −2.09 | 4.46 |
| 36 | 9.49 | 9.48 | −2.09 | 5.81 |
| 37 | 8.85 | 9.13 | −2.09 | 5.45 |
| 38 | 7.89 | 7.78 | 1.47 | 0.54 |
| 39 | 6.89 | 6.77 | 0.46 | 0.54 |
| 40 | 6.41 | 6.54 | 0.22 | 0.54 |
| 41 | 5.32 | 5.27 | −0.09 | −0.41 |
| 42 | 6.77 | 6.83 | 1.47 | −0.41 |
| 43 | 7.67 | 7.82 | 1.47 | 0.58 |
| 44 | 9.60 | 9.14 | 1.47 | 1.90 |
| 45 | 7.49 | 7.74 | 0.53 | 1.45 |
| 46 | 7.52 | 7.57 | 0.53 | 1.27 |
| 47 | 8.16 | 8.19 | 0.53 | 1.90 |
| 48 | 9.57 | 9.87 | 1.47 | 2.63 |
| 49 | 9.17 | 9.29 | 1.47 | 2.05 |
| 50 | 5.66 | 4.96 | −2.09 | 1.29 |
| 51 | 5.47 | 5.52 | −2.09 | 1.84 |
| 52 | 5.63 | 5.15 | −0.67 | 0.06 |
| 53 | 7.23 | 8.05 | 1.05 | 1.23 |
| 54 | 7.53 | 7.06 | 0.10 | 1.19 |
| 55 | 7.56 | 7.28 | 0.10 | 1.41 |
| 56 | 7.35 | 7.76 | 1.45 | 0.54 |
| 57 | 6.34 | 6.71 | 0.40 | 0.54 |
| 58 | 6.54 | 6.22 | −0.09 | 0.54 |
| 59 | 5.43 | 5.59 | 0.22 | −0.41 |
| 60 | 7.42 | 8.23 | 0.53 | 1.93 |
| 61 | 7.45 | 8.32 | 0.53 | 2.02 |
| / | 5.95 | 1.21 | 0.17 | |
Figure 6Plot (A) of the experimental data versus the predicted values andtheplot (B) of inhibition ratio at different concentrations of FB to the AChE.
Figure 7The 3D contour mapsof the TopomerCoMFAmodelfor R1 and R2 of FB
The steric contour maps of R1 (A) and R2 (C); the electrostaticcontour maps of R1 (B) and R2 (D).