Literature DB >> 28912132

Mitotic transcription and waves of gene reactivation during mitotic exit.

Katherine C Palozola1,2, Greg Donahue2, Hong Liu3, Gregory R Grant4, Justin S Becker1,2, Allison Cote5, Hongtao Yu6, Arjun Raj5, Kenneth S Zaret7,2.   

Abstract

Although the genome is generally thought to be transcriptionally silent during mitosis, technical limitations have prevented sensitive mapping of transcription during mitosis and mitotic exit. Thus, the means by which the interphase expression pattern is transduced to daughter cells have been unclear. We used 5-ethynyluridine to pulse-label transcripts during mitosis and mitotic exit and found that many genes exhibit transcription during mitosis, as confirmed with fluorescein isothiocyanate-uridine 5'-triphosphate labeling, RNA fluorescence in situ hybridization, and quantitative reverse transcription polymerase chain reaction. The first round of transcription immediately after mitosis primarily activates genes involved in the growth and rebuilding of daughter cells, rather than cell type-specific functions. We propose that the cell's transcription pattern is largely retained at a low level through mitosis, whereas the amplitude of transcription observed in interphase is reestablished during mitotic exit.
Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2017        PMID: 28912132      PMCID: PMC5727891          DOI: 10.1126/science.aal4671

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  35 in total

1.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

2.  Organization of the mitotic chromosome.

Authors:  Natalia Naumova; Maxim Imakaev; Geoffrey Fudenberg; Ye Zhan; Bryan R Lajoie; Leonid A Mirny; Job Dekker
Journal:  Science       Date:  2013-11-07       Impact factor: 47.728

3.  Mapping and quantifying mammalian transcriptomes by RNA-Seq.

Authors:  Ali Mortazavi; Brian A Williams; Kenneth McCue; Lorian Schaeffer; Barbara Wold
Journal:  Nat Methods       Date:  2008-05-30       Impact factor: 28.547

4.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

5.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

6.  Genome accessibility is widely preserved and locally modulated during mitosis.

Authors:  Chris C-S Hsiung; Christapher S Morrissey; Maheshi Udugama; Christopher L Frank; Cheryl A Keller; Songjoon Baek; Belinda Giardine; Gregory E Crawford; Myong-Hee Sung; Ross C Hardison; Gerd A Blobel
Journal:  Genome Res       Date:  2014-11-04       Impact factor: 9.043

7.  A dynamic mode of mitotic bookmarking by transcription factors.

Authors:  Sheila S Teves; Luye An; Anders S Hansen; Liangqi Xie; Xavier Darzacq; Robert Tjian
Journal:  Elife       Date:  2016-11-19       Impact factor: 8.140

8.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nucleic Acids Res       Date:  2008-11-25       Impact factor: 16.971

9.  TiGER: a database for tissue-specific gene expression and regulation.

Authors:  Xiong Liu; Xueping Yu; Donald J Zack; Heng Zhu; Jiang Qian
Journal:  BMC Bioinformatics       Date:  2008-06-09       Impact factor: 3.169

10.  Cell-cycle control of developmentally regulated transcription factors accounts for heterogeneity in human pluripotent cells.

Authors:  Amar M Singh; James Chappell; Robert Trost; Li Lin; Tao Wang; Jie Tang; Brittany K Matlock; Kevin P Weller; Hao Wu; Shaying Zhao; Peng Jin; Stephen Dalton
Journal:  Stem Cell Reports       Date:  2013-12-05       Impact factor: 7.765

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  67 in total

1.  Saccharomyces cerevisiae Metabolic Labeling with 4-thiouracil and the Quantification of Newly Synthesized mRNA As a Proxy for RNA Polymerase II Activity.

Authors:  Tiago Baptista; Didier Devys
Journal:  J Vis Exp       Date:  2018-10-22       Impact factor: 1.355

Review 2.  Dynamics of protein synthesis and degradation through the cell cycle.

Authors:  Andrea Brigitta Alber; David Michael Suter
Journal:  Cell Cycle       Date:  2019-03-30       Impact factor: 4.534

3.  Mammalian cell growth dynamics in mitosis.

Authors:  Teemu P Miettinen; Joon Ho Kang; Lucy F Yang; Scott R Manalis
Journal:  Elife       Date:  2019-05-07       Impact factor: 8.140

4.  Nuclear localization signal region in nuclear receptor PXR governs the receptor association with mitotic chromatin.

Authors:  Manjul Rana; Amit K Dash; Kalaiarasan Ponnusamy; Rakesh K Tyagi
Journal:  Chromosome Res       Date:  2018-07-15       Impact factor: 5.239

5.  Comparison of Nuclear Matrix and Mitotic Chromosome Scaffold Proteins in Drosophila S2 Cells-Transmission of Hallmarks of Nuclear Organization Through Mitosis.

Authors:  Rahul Sureka; Rashi Wadhwa; Suman S Thakur; Rashmi U Pathak; Rakesh K Mishra
Journal:  Mol Cell Proteomics       Date:  2018-07-10       Impact factor: 5.911

6.  The Cytoplasmic DNA Sensor cGAS Promotes Mitotic Cell Death.

Authors:  Christian Zierhut; Norihiro Yamaguchi; Maria Paredes; Ji-Dung Luo; Thomas Carroll; Hironori Funabiki
Journal:  Cell       Date:  2019-07-11       Impact factor: 41.582

7.  Cohesin Removal Reprograms Gene Expression upon Mitotic Entry.

Authors:  Carlos Perea-Resa; Leah Bury; Iain M Cheeseman; Michael D Blower
Journal:  Mol Cell       Date:  2020-02-07       Impact factor: 17.970

8.  Single-transcript multiplex in situ hybridisation reveals unique patterns of dystrophin isoform expression in the developing mammalian embryo.

Authors:  John C W Hildyard; Abbe H Crawford; Faye Rawson; Dominique O Riddell; Rachel C M Harron; Richard J Piercy
Journal:  Wellcome Open Res       Date:  2020-07-20

Review 9.  Mitotic Gene Bookmarking: An Epigenetic Program to Maintain Normal and Cancer Phenotypes.

Authors:  Sayyed K Zaidi; Jeffrey A Nickerson; Anthony N Imbalzano; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  Mol Cancer Res       Date:  2018-07-12       Impact factor: 5.852

10.  Cryo-ET reveals the macromolecular reorganization of S. pombe mitotic chromosomes in vivo.

Authors:  Shujun Cai; Chen Chen; Zhi Yang Tan; Yinyi Huang; Jian Shi; Lu Gan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-08       Impact factor: 11.205

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