Literature DB >> 28911779

Measurement of Enzyme Isotope Effects.

Svetlana A Kholodar1, Ananda K Ghosh1, Amnon Kohen2.   

Abstract

Enzyme isotope effects, or the kinetic effects of "heavy" enzymes, refer to the effect of isotopically labeled protein residues on the enzyme's activity or physical properties. These effects are increasingly employed in the examination of the possible contributions of protein dynamics to enzyme catalysis. One hypothesis assumed that isotopic substitution of all 12C, 14N, and nonexchangeable 1H by 13C, 15N, and 2H, would slow down protein picosecond to femtosecond dynamics without any effect on the system's electrostatics following the Born-Oppenheimer approximation. It was suggested that reduced reaction rates reported for several "heavy" enzymes accords with that hypothesis. However, numerous deviations from the predictions of that hypothesis were also reported. Current studies also attempt to test the role of individual residues by site-specific labeling or by labeling a pattern of residues on activity. It appears that in several systems the protein's fast dynamics are indeed reduced in "heavy" enzymes in a way that reduces the probability of barrier crossing of its chemical step. Other observations, however, indicated that slower protein dynamics are electrostatically altered in isotopically labeled enzymes. Interestingly, these effects appear to be system dependent, thus it might be premature to suggest a general role of "heavy" enzymes' effect on catalysis.
© 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Enzyme catalysis; Heavy enzyme; Protein dynamics

Mesh:

Substances:

Year:  2017        PMID: 28911779     DOI: 10.1016/bs.mie.2017.06.033

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  10 in total

1.  Crystal Structure and Biophysical Analysis of Furfural-Detoxifying Aldehyde Reductase from Clostridium beijerinckii.

Authors:  Alan F Scott; Joel Cresser-Brown; Thomas L Williams; Pierre J Rizkallah; Yi Jin; Louis Y-P Luk; Rudolf K Allemann
Journal:  Appl Environ Microbiol       Date:  2019-07-18       Impact factor: 4.792

2.  Role of Protein Motions in Catalysis by Formate Dehydrogenase.

Authors:  Dimitri Antoniou; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2020-10-16       Impact factor: 2.991

3.  Inverse enzyme isotope effects in human purine nucleoside phosphorylase with heavy asparagine labels.

Authors:  Rajesh K Harijan; Ioanna Zoi; Dimitri Antoniou; Steven D Schwartz; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-18       Impact factor: 11.205

4.  Active-Site Glu165 Activation in Triosephosphate Isomerase and Its Deprotonation Kinetics.

Authors:  Hua Deng; R Brian Dyer; Robert Callender
Journal:  J Phys Chem B       Date:  2019-05-02       Impact factor: 2.991

Review 5.  Promoting Vibrations and the Function of Enzymes. Emerging Theoretical and Experimental Convergence.

Authors:  Vern L Schramm; Steven D Schwartz
Journal:  Biochemistry       Date:  2018-04-10       Impact factor: 3.162

Review 6.  Enzymatic Transition States and Drug Design.

Authors:  Vern L Schramm
Journal:  Chem Rev       Date:  2018-10-18       Impact factor: 60.622

7.  Inverse heavy enzyme isotope effects in methylthioadenosine nucleosidases.

Authors:  Morais Brown; Ioanna Zoi; Dimitri Antoniou; Hilda A Namanja-Magliano; Steven D Schwartz; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-05       Impact factor: 11.205

8.  Protein Mass Effects on Formate Dehydrogenase.

Authors:  Chethya Ranasinghe; Qi Guo; Paul J Sapienza; Andrew L Lee; Daniel M Quinn; Christopher M Cheatum; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2017-11-27       Impact factor: 16.383

9.  Heavy Enzymes and the Rational Redesign of Protein Catalysts.

Authors:  Alan F Scott; Louis Y-P Luk; Iñaki Tuñón; Vicent Moliner; Rudolf K Allemann
Journal:  Chembiochem       Date:  2019-07-24       Impact factor: 3.164

10.  Cryo-kinetics Reveal Dynamic Effects on the Chemistry of Human Dihydrofolate Reductase.

Authors:  Aduragbemi S Adesina; Louis Y P Luk; Rudolf K Allemann
Journal:  Chembiochem       Date:  2021-05-04       Impact factor: 3.164

  10 in total

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