Literature DB >> 28903058

Insuperable problems of the genetic code initially emerging in an RNA world.

Peter R Wills1, Charles W Carter2.   

Abstract

Differential equations for error-prone information transfer (template replication, transcription or translation) are developed in order to consider, within the theory of autocatalysis, the advent of coded protein synthesis. Variations of these equations furnish a basis for comparing the plausibility of contrasting scenarios for the emergence of specific tRNA aminoacylation, ultimately by enzymes, and the relationship of this process with the origin of the universal system of molecular biological information processing embodied in the Central Dogma. The hypothetical RNA World does not furnish an adequate basis for explaining how this system came into being, but principles of self-organisation that transcend Darwinian natural selection furnish an unexpectedly robust basis for a rapid, concerted transition to genetic coding from a peptide·RNA world.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Aminoacyl-tRNA synthetase; Autocatalysis; GRT systems; Quasi-species bifurcation; RNA World

Mesh:

Substances:

Year:  2017        PMID: 28903058      PMCID: PMC5895081          DOI: 10.1016/j.biosystems.2017.09.006

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  36 in total

1.  Self-description and the origin of the genetic code.

Authors:  V Bedian
Journal:  Biosystems       Date:  2001 Apr-May       Impact factor: 1.973

2.  Evolutionary self-organization of cell-free genetic coding.

Authors:  R M Füchslin; J S McCaskill
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

Review 3.  Multilevel selection in models of prebiotic evolution: compartments and spatial self-organization.

Authors:  Paulien Hogeweg; Nobuto Takeuchi
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

4.  The maintenance of the accuracy of protein synthesis and its relevance to ageing.

Authors:  L E ORGEL
Journal:  Proc Natl Acad Sci U S A       Date:  1963-04       Impact factor: 11.205

Review 5.  Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life.

Authors:  Nobuto Takeuchi; Paulien Hogeweg
Journal:  Phys Life Rev       Date:  2012-06-13       Impact factor: 11.025

6.  On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases.

Authors:  S N Rodin; A S Rodin
Journal:  Heredity (Edinb)       Date:  2008-03-05       Impact factor: 3.821

7.  Amplification of RNA by an RNA polymerase ribozyme.

Authors:  David P Horning; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-15       Impact factor: 11.205

Review 8.  Origin and evolution of the genetic code: the universal enigma.

Authors:  Eugene V Koonin; Artem S Novozhilov
Journal:  IUBMB Life       Date:  2009-02       Impact factor: 3.885

9.  Autocatalytic sets in E. coli metabolism.

Authors:  Filipa L Sousa; Wim Hordijk; Mike Steel; William F Martin
Journal:  J Syst Chem       Date:  2015-04-01

10.  Interdependence, Reflexivity, Fidelity, Impedance Matching, and the Evolution of Genetic Coding.

Authors:  Charles W Carter; Peter R Wills
Journal:  Mol Biol Evol       Date:  2018-02-01       Impact factor: 16.240

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  16 in total

Review 1.  Experimental solutions to problems defining the origin of codon-directed protein synthesis.

Authors:  Charles W Carter; Peter R Wills
Journal:  Biosystems       Date:  2019-06-06       Impact factor: 1.973

2.  In the Beginning was a Mutualism - On the Origin of Translation.

Authors:  Marko Vitas; Andrej Dobovišek
Journal:  Orig Life Evol Biosph       Date:  2018-04-30       Impact factor: 1.950

3.  The Ancient Operational Code is Embedded in the Amino Acid Substitution Matrix and aaRS Phylogenies.

Authors:  Julia A Shore; Barbara R Holland; Jeremy G Sumner; Kay Nieselt; Peter R Wills
Journal:  J Mol Evol       Date:  2019-11-28       Impact factor: 2.395

4.  Hierarchical groove discrimination by Class I and II aminoacyl-tRNA synthetases reveals a palimpsest of the operational RNA code in the tRNA acceptor-stem bases.

Authors:  Charles W Carter; Peter R Wills
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

5.  What Does "the RNA World" Mean to "the Origin of Life"?

Authors:  Wentao Ma
Journal:  Life (Basel)       Date:  2017-11-29

6.  Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases.

Authors:  Florian Kaiser; Sebastian Bittrich; Sebastian Salentin; Christoph Leberecht; V Joachim Haupt; Sarah Krautwurst; Michael Schroeder; Dirk Labudde
Journal:  PLoS Comput Biol       Date:  2018-04-16       Impact factor: 4.475

7.  Low-Digit and High-Digit Polymers in the Origin of Life.

Authors:  Peter Strazewski
Journal:  Life (Basel)       Date:  2019-02-02

8.  Interdependence, Reflexivity, Fidelity, Impedance Matching, and the Evolution of Genetic Coding.

Authors:  Charles W Carter; Peter R Wills
Journal:  Mol Biol Evol       Date:  2018-02-01       Impact factor: 16.240

9.  Intrinsic Properties of tRNA Molecules as Deciphered via Bayesian Network and Distribution Divergence Analysis.

Authors:  Sergio Branciamore; Grigoriy Gogoshin; Massimo Di Giulio; Andrei S Rodin
Journal:  Life (Basel)       Date:  2018-02-08

10.  Aminoacyl-tRNA synthetase evolution and sectoring of the genetic code.

Authors:  Daewoo Pak; Yunsoo Kim; Zachary F Burton
Journal:  Transcription       Date:  2018-05-30
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