Literature DB >> 2890298

Neutrality tests of highly polymorphic restriction-fragment-length polymorphisms.

A G Clark1.   

Abstract

The allele frequency data of Baird et al. were tested using Ewens-Watterson sampling theory for goodness of fit to the infinite-alleles model of neutral evolution. Although probes of both the HRAS-1 and D14S1 loci identify highly diverse restriction-fragment-length polymorphisms, the observed values of gene identity (F) and the common allele frequency (C) are not significantly different from the neutral expectation. Allele frequency distributions show a tendency toward a deficit in diversity for HRAS-1 and a slight excess diversity for D14S1. The direction of these departures is consistent with potential selective effects of the Harvey-ras oncogene and hitchhiking of the D14S1 locus to closely linked immunoglobulin genes. Direct chi 2-tests of goodness of fit of the observed and expected allele frequency distributions reveal significant departures in the caucasoid and Hispanic HRAS-1 distributions but not in any of the other tests.

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Mesh:

Year:  1987        PMID: 2890298      PMCID: PMC1684334     

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  16 in total

1.  An analysis of multi-allelic data.

Authors:  G A Watterson
Journal:  Genetics       Date:  1978-01       Impact factor: 4.562

2.  Estimation of average heterozygosity and genetic distance from a small number of individuals.

Authors:  M Nei
Journal:  Genetics       Date:  1978-07       Impact factor: 4.562

3.  Statistical studies on protein polymorphism in natural populations. I. Distribution of single locus heterozygosity.

Authors:  P A Fuerst; R Chakraborty; M Nei
Journal:  Genetics       Date:  1977-06       Impact factor: 4.562

4.  The sampling theory of selectively neutral alleles.

Authors:  W J Ewens
Journal:  Theor Popul Biol       Date:  1972-03       Impact factor: 1.570

5.  Nearly identical allelic distributions of xanthine dehydrogenase in two populations of Drosophila pseudoobscura.

Authors:  T P Keith; L D Brooks; R C Lewontin; J C Martinez-Cruzado; D L Rigby
Journal:  Mol Biol Evol       Date:  1985-05       Impact factor: 16.240

6.  Allele frequency distribution of two highly polymorphic DNA sequences in three ethnic groups and its application to the determination of paternity.

Authors:  M Baird; I Balazs; A Giusti; L Miyazaki; L Nicholas; K Wexler; E Kanter; J Glassberg; F Allen; P Rubinstein
Journal:  Am J Hum Genet       Date:  1986-10       Impact factor: 11.025

7.  Frequency Distribution of Esterase-5 Alleles in Two Populations of DROSOPHILA PSEUDOOBSCURA.

Authors:  T P Keith
Journal:  Genetics       Date:  1983-09       Impact factor: 4.562

Review 8.  Report of the Committee on the Genetic Constitution of Chromosomes 10, 11, and 12.

Authors:  P S Gerald; K H Grzeschik
Journal:  Cytogenet Cell Genet       Date:  1984

9.  Complete nucleotide sequences of the T24 human bladder carcinoma oncogene and its normal homologue.

Authors:  D J Capon; E Y Chen; A D Levinson; P H Seeburg; D V Goeddel
Journal:  Nature       Date:  1983-03-03       Impact factor: 49.962

10.  A highly polymorphic locus in human DNA.

Authors:  A R Wyman; R White
Journal:  Proc Natl Acad Sci U S A       Date:  1980-11       Impact factor: 11.205

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  13 in total

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Authors:  Matthew T Webster; John B Clegg; Rosalind M Harding
Journal:  Hum Genet       Date:  2003-05-08       Impact factor: 4.132

2.  Extensive genetic diversity in the HLA class II region of Africans, with a focally predominant allele, DRB1*1304.

Authors:  A V Hill; C E Allsopp; D Kwiatkowski; T E Taylor; S N Yates; N M Anstey; J J Wirima; D R Brewster; A J McMichael; M E Molyneux
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-15       Impact factor: 11.205

3.  Departure of human mitochondrial DNA variation from neutral expectations: an alternative explanation.

Authors:  M Stoneking
Journal:  J Mol Evol       Date:  1990-10       Impact factor: 2.395

4.  Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana.

Authors:  H Innan; R Terauchi; N T Miyashita
Journal:  Genetics       Date:  1997-08       Impact factor: 4.562

5.  Heterozygote deficiency, population substructure and their implications in DNA fingerprinting.

Authors:  R Chakraborty; L Jin
Journal:  Hum Genet       Date:  1992-01       Impact factor: 4.132

6.  An ancient common origin of aboriginal Australians and New Guinea highlanders is supported by alpha-globin haplotype analysis.

Authors:  J M Roberts-Thomson; J J Martinson; J T Norwich; R M Harding; J B Clegg; B Boettcher
Journal:  Am J Hum Genet       Date:  1996-05       Impact factor: 11.025

7.  Population bottlenecks in Polynesia revealed by minisatellites.

Authors:  J Flint; A J Boyce; J J Martinson; J B Clegg
Journal:  Hum Genet       Date:  1989-10       Impact factor: 4.132

8.  The structure of human mitochondrial DNA variation.

Authors:  D A Merriwether; A G Clark; S W Ballinger; T G Schurr; H Soodyall; T Jenkins; S T Sherry; D C Wallace
Journal:  J Mol Evol       Date:  1991-12       Impact factor: 2.395

9.  Allelic polymorphism of human T-cell receptor V alpha gene segments.

Authors:  H Reyburn; F Cornélis; V Russell; R Harding; P Moss; J Bell
Journal:  Immunogenetics       Date:  1993       Impact factor: 2.846

10.  Natural selection with nuclear and cytoplasmic transmission. III. Joint analysis of segregation and mtDNA in Drosophila melanogaster.

Authors:  A G Clark; E M Lyckegaard
Journal:  Genetics       Date:  1988-03       Impact factor: 4.562

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