Literature DB >> 28898079

A General Route to Include Pauli Repulsion and Quantum Dispersion Effects in QM/MM Approaches.

Tommaso Giovannini1, Piero Lafiosca1, Chiara Cappelli1.   

Abstract

A methodology to account for nonelectrostatic interactions in Quantum Mechanical (QM)/Molecular Mechanics (MM) approaches is developed. Formulations for Pauli repulsion and dispersion energy, explicitly depending on the QM density, are derived. Such expressions are based on the definition of an auxiliary density on the MM portion and the Tkatchenko-Scheffler (TS) approach, respectively. The developed method is general enough to be applied to any QM/MM method and partition, provided an accurate tuning of a small number of parameters is obtained. The coupling of the method with both nonpolarizable and fully polarizable QM/fluctuating charge (FQ) approaches is reported and applied. A suitable parametrization for the aqueous solution, so that its most representative features are well reproduced, is outlined. Then, the obtained parametrization and method are applied to calculate the nonelectrostatic (repulsion and dispersion) interaction energy of nicotine in aqueous solution.

Entities:  

Year:  2017        PMID: 28898079     DOI: 10.1021/acs.jctc.7b00776

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  10 in total

1.  A Many-Body, Fully Polarizable Approach to QM/MM Simulations.

Authors:  Eleftherios Lambros; Filippo Lipparini; Gerardo Andrés Cisneros; Francesco Paesani
Journal:  J Chem Theory Comput       Date:  2020-11-19       Impact factor: 6.006

2.  Evaluation of molecular photophysical and photochemical properties using linear response time-dependent density functional theory with classical embedding: Successes and challenges.

Authors:  WanZhen Liang; Zheng Pei; Yuezhi Mao; Yihan Shao
Journal:  J Chem Phys       Date:  2022-06-07       Impact factor: 4.304

3.  Amide Spectral Fingerprints are Hydrogen Bonding-Mediated.

Authors:  Sara Gómez; Cettina Bottari; Franco Egidi; Tommaso Giovannini; Barbara Rossi; Chiara Cappelli
Journal:  J Phys Chem Lett       Date:  2022-06-30       Impact factor: 6.888

4.  Covalent Inhibition of the Human 20S Proteasome with Homobelactosin C Inquired by QM/MM Studies.

Authors:  Natalia Serrano-Aparicio; Silvia Ferrer; Katarzyna Świderek
Journal:  Pharmaceuticals (Basel)       Date:  2022-04-25

5.  QM/MM Simulations with the Gaussian Electrostatic Model: A Density-based Polarizable Potential.

Authors:  Hatice Gökcan; Eric Kratz; Thomas A Darden; Jean-Philip Piquemal; G Andrés Cisneros
Journal:  J Phys Chem Lett       Date:  2018-05-23       Impact factor: 6.475

6.  A simplified charge projection scheme for long-range electrostatics in ab initio QM/MM calculations.

Authors:  Xiaoliang Pan; Kwangho Nam; Evgeny Epifanovsky; Andrew C Simmonett; Edina Rosta; Yihan Shao
Journal:  J Chem Phys       Date:  2021-01-14       Impact factor: 3.488

7.  Multilevel Density Functional Theory.

Authors:  Gioia Marrazzini; Tommaso Giovannini; Marco Scavino; Franco Egidi; Chiara Cappelli; Henrik Koch
Journal:  J Chem Theory Comput       Date:  2021-01-15       Impact factor: 6.006

8.  Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study.

Authors:  Sulejman Skoko; Matteo Ambrosetti; Tommaso Giovannini; Chiara Cappelli
Journal:  Molecules       Date:  2020-12-11       Impact factor: 4.411

9.  Absorption Properties of Large Complex Molecular Systems: The DFTB/Fluctuating Charge Approach.

Authors:  Piero Lafiosca; Sara Gómez; Tommaso Giovannini; Chiara Cappelli
Journal:  J Chem Theory Comput       Date:  2022-02-20       Impact factor: 6.006

10.  Calculation of Linear and Non-linear Electric Response Properties of Systems in Aqueous Solution: A Polarizable Quantum/Classical Approach with Quantum Repulsion Effects.

Authors:  Gioia Marrazzini; Tommaso Giovannini; Franco Egidi; Chiara Cappelli
Journal:  J Chem Theory Comput       Date:  2020-10-15       Impact factor: 6.006

  10 in total

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