Literature DB >> 28895083

Influence of Transition Metal Cationization versus Sodium Cationization and Protonation on the Gas-Phase Tautomeric Conformations and Stability of Uracil: Application to [Ura+Cu]+ and [Ura+Ag]<sup/>.

T E Akinyemi1, R R Wu1, Y-W Nei1, N A Cunningham1, H A Roy1, J D Steill2, G Berden2, J Oomens2,3, M T Rodgers4.   

Abstract

The gas-phase conformations of transition metal cation-uracil complexes, [Ura+Cu]+ and [Ura+Ag]+, were examined via infrared multiple photon dissociation (IRMPD) action spectroscopy and theoretical calculations. IRMPD action spectra were measured over the IR fingerprint and hydrogen-stretching regions. Structures and linear IR spectra of the stable tautomeric conformations of these complexes were initially determined at the B3LYP/6-31G(d) level. The four most stable structures computed were also examined at the B3LYP/def2-TZVPPD level to improve the accuracy of the predicted IR spectra. Two very favorable modes of binding are found for [Ura+Cu]+ and [Ura+Ag]+ that involve O2N3 bidentate binding to the 2-keto-4-hydroxy minor tautomer and O4 monodentate binding to the canonical 2,4-diketo tautomer of Ura. Comparisons between the measured IRMPD and calculated IR spectra enable elucidation of the conformers present in the experiments. These comparisons indicate that both favorable binding modes are represented in the experimental tautomeric conformations of [Ura+Cu]+ and [Ura+Ag]+. B3LYP suggests that Cu+ exhibits a slight preference for O4 binding, whereas Ag+ exhibits a slight preference for O2N3 binding. In contrast, MP2 suggests that both Cu+ and Ag+ exhibit a more significant preference for O2N3 binding. The relative band intensities suggest that O4 binding conformers comprise a larger portion of the population for [Ura+Ag]+ than [Ura+Cu]+. The dissociation behavior and relative stabilities of the [Ura+M]+ complexes, M+ = Cu+, Ag+, H+, and Na+) are examined via energy-resolved collision-induced dissociation experiments. The IRMPD spectra, dissociation behaviors, and binding preferences of Cu+ and Ag+ are compared with previous and present results for those of H+ and Na+. Graphical Abstract ᅟ.

Entities:  

Keywords:  Copper; Energy-resolved collision-induced dissociation; Fourier transform ion cyclotron resonance; Free electron laser; Infrared multiple photon dissociation; Silver; Tautomer; Uracil

Year:  2017        PMID: 28895083     DOI: 10.1007/s13361-017-1771-3

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  37 in total

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Journal:  ACS Nano       Date:  2012-03-02       Impact factor: 15.881

Review 3.  Reaction products in mass spectrometry elucidated with infrared spectroscopy.

Authors:  Nick C Polfer; Jos Oomens
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Journal:  Phys Chem Chem Phys       Date:  2017-06-30       Impact factor: 3.676

5.  Influence of Sodium Cationization versus Protonation on the Gas-Phase Conformations and Glycosidic Bond Stabilities of 2'-Deoxyadenosine and Adenosine.

Authors:  Y Zhu; L A Hamlow; C C He; S F Strobehn; J K Lee; J Gao; G Berden; J Oomens; M T Rodgers
Journal:  J Phys Chem B       Date:  2016-08-19       Impact factor: 2.991

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7.  Cationic Noncovalent Interactions: Energetics and Periodic Trends.

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8.  Noncovalent interactions of Ni+ with N-donor ligands (pyridine, 4,4'-dipyridyl, 2,2'-dipyridyl, and 1,10-phenanthroline): collision-induced dissociation and theoretical studies.

Authors:  N S Rannulu; M T Rodgers
Journal:  J Phys Chem A       Date:  2009-04-23       Impact factor: 2.781

9.  Modeling metal cation-phosphate interactions in nucleic acids: activated dissociation of Mg+, Al+, Cu+, and Zn+ complexes of triethyl phosphate.

Authors:  Chunhai Ruan; M T Rodgers
Journal:  J Am Chem Soc       Date:  2009-08-12       Impact factor: 15.419

10.  Bond dissociation energies and equilibrium structures of Cu+(MeOH)x, x = 1-6, in the gas phase: competition between solvation of the metal ion and hydrogen-bonding interactions.

Authors:  Z Yang; N S Rannulu; Y Chu; M T Rodgers
Journal:  J Phys Chem A       Date:  2008-01-03       Impact factor: 2.781

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