Literature DB >> 28893416

NMR studies of the non-haem Fe(II) and 2-oxoglutarate-dependent oxygenases.

Naasson M Mbenza1, Praveen G Vadakkedath2, Duncan J McGillivray2, Ivanhoe K H Leung3.   

Abstract

The non-haem Fe(II) and 2-oxoglutarate (2OG)-dependent oxygenases belong to a superfamily of structurally-related enzymes that play important biological roles in plants, microorganisms and animals. Structural, mechanistic and functional studies of 2OG oxygenases require efficient and effective biophysical tools. Nuclear magnetic resonance (NMR) spectroscopy is a useful tool to study this enzyme superfamily. It has been applied to obtain information about enzyme kinetics, identify and characterise 2OG oxygenase-catalysed oxidation products, elucidate the catalytic mechanism, monitor ligand binding and study protein dynamics. This review summarises the types of information that NMR spectroscopy can provide in the studies of 2OG oxygenases, highlights the advantages of the technique and describes its drawbacks.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  2OG oxygenase; DSBH/Cupin fold; Enzyme inhibition; Enzyme kinetics; Enzyme mechanism; NMR spectroscopy; Protein dynamics

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Year:  2017        PMID: 28893416     DOI: 10.1016/j.jinorgbio.2017.08.032

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  3 in total

1.  Protein Flexibility of the α-Ketoglutarate-Dependent Oxygenase Factor-Inhibiting HIF-1: Implications for Substrate Binding, Catalysis, and Regulation.

Authors:  Cristina B Martin; Vanessa D Chaplin; Stephen J Eyles; Michael J Knapp
Journal:  Biochemistry       Date:  2019-09-20       Impact factor: 3.162

2.  2-Oxoglutarate regulates binding of hydroxylated hypoxia-inducible factor to prolyl hydroxylase domain 2.

Authors:  Martine I Abboud; Tom E McAllister; Ivanhoe K H Leung; Rasheduzzaman Chowdhury; Christian Jorgensen; Carmen Domene; Jasmin Mecinović; Kerstin Lippl; Rebecca L Hancock; Richard J Hopkinson; Akane Kawamura; Timothy D W Claridge; Christopher J Schofield
Journal:  Chem Commun (Camb)       Date:  2018-03-09       Impact factor: 6.222

3.  Development of NMR and thermal shift assays for the evaluation of Mycobacterium tuberculosis isocitrate lyase inhibitors.

Authors:  Ram Prasad Bhusal; Krunal Patel; Brooke X C Kwai; Anne Swartjes; Ghader Bashiri; Jóhannes Reynisson; Jonathan Sperry; Ivanhoe K H Leung
Journal:  Medchemcomm       Date:  2017-10-17       Impact factor: 3.597

  3 in total

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