Literature DB >> 28891501

A comparison of computational models for the extracellular potential of neurons.

Jurgis Pods1.   

Abstract

The extracellular space has an ambiguous role in neuroscience. It is present in every physiologically relevant system and often used as a measurement site in experimental recordings, but it has received subordinate attention compared to the intracellular domain. In computational modeling, it is often regarded as a passive, homogeneous resistive medium with a constant conductivity, which greatly simplifies the computation of extracellular potentials. However, novel studies have shown that local ionic diffusion and capacitive effects of electrically active membranes can have a substantial impact on the extracellular potential. These effects can not be described by traditional models, and they have been subject to recent theoretical and experimental analyses. We strive to give an overview over current progress in modeling the extracellular space with special regard towards the concentration and potential dynamics on different temporal and spatial scales. Three models with distinct assumptions and levels of detail are compared both theoretically and by means of numerical simulations: the classical volume conductor (VC) model, which is most frequently used in form of the line source approximation (LSA); the biophysically detailed, but computationally intensive Poisson-Nernst-Planck model of electrodiffusion (PNP); and an intermediate model called the electroneutral model (EN). The results clearly show that there is no one model for all applications, as they show significantly different responses - especially close to neuronal membranes. Finally, we list some common use cases for model simulations and give recommendations on which model to use in each situation.

Keywords:  EAP; Extracellular potential; LFP; LSA; PNP; computational model

Mesh:

Year:  2017        PMID: 28891501     DOI: 10.3233/JIN-170009

Source DB:  PubMed          Journal:  J Integr Neurosci        ISSN: 0219-6352            Impact factor:   2.117


  8 in total

1.  Computing Extracellular Electric Potentials from Neuronal Simulations.

Authors:  Torbjørn V Ness; Geir Halnes; Solveig Næss; Klas H Pettersen; Gaute T Einevoll
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

2.  A phenomenological computational model of the evoked action potential fitted to human cochlear implant responses.

Authors:  Ángel Ramos-de-Miguel; José M Escobar; David Greiner; Domingo Benítez; Eduardo Rodríguez; Albert Oliver; Marcos Hernández; Ángel Ramos-Macías
Journal:  PLoS Comput Biol       Date:  2022-05-27       Impact factor: 4.779

3.  From Maxwell's equations to the theory of current-source density analysis.

Authors:  Sergey L Gratiy; Geir Halnes; Daniel Denman; Michael J Hawrylycz; Christof Koch; Gaute T Einevoll; Costas A Anastassiou
Journal:  Eur J Neurosci       Date:  2017-03-28       Impact factor: 3.386

4.  An Evaluation of the Accuracy of Classical Models for Computing the Membrane Potential and Extracellular Potential for Neurons.

Authors:  Aslak Tveito; Karoline H Jæger; Glenn T Lines; Łukasz Paszkowski; Joakim Sundnes; Andrew G Edwards; Tuomo Māki-Marttunen; Geir Halnes; Gaute T Einevoll
Journal:  Front Comput Neurosci       Date:  2017-04-24       Impact factor: 2.380

5.  The Role of Potassium Channels in Arabidopsis thaliana Long Distance Electrical Signalling: AKT2 Modulates Tissue Excitability While GORK Shapes Action Potentials.

Authors:  Tracey Ann Cuin; Ingo Dreyer; Erwan Michard
Journal:  Int J Mol Sci       Date:  2018-03-21       Impact factor: 5.923

6.  PyPNS: Multiscale Simulation of a Peripheral Nerve in Python.

Authors:  Carl H Lubba; Yann Le Guen; Sarah Jarvis; Nick S Jones; Simon C Cork; Amir Eftekhar; Simon R Schultz
Journal:  Neuroinformatics       Date:  2019-01

7.  Finite Element Simulation of Ionic Electrodiffusion in Cellular Geometries.

Authors:  Ada J Ellingsrud; Andreas Solbrå; Gaute T Einevoll; Geir Halnes; Marie E Rognes
Journal:  Front Neuroinform       Date:  2020-03-25       Impact factor: 4.081

8.  A Kirchhoff-Nernst-Planck framework for modeling large scale extracellular electrodiffusion surrounding morphologically detailed neurons.

Authors:  Andreas Solbrå; Aslak Wigdahl Bergersen; Jonas van den Brink; Anders Malthe-Sørenssen; Gaute T Einevoll; Geir Halnes
Journal:  PLoS Comput Biol       Date:  2018-10-04       Impact factor: 4.475

  8 in total

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