Literature DB >> 28890401

Aggregation properties of a disordered protein are tunable by pH and depend on its net charge per residue.

Giulia Tedeschi1, Marco Mangiagalli1, Sara Chmielewska1, Marina Lotti1, Antonino Natalello2, Stefania Brocca3.   

Abstract

Intrinsically disordered proteins (IDPs) possess a peculiar amino acid composition that makes them very soluble. Nevertheless, they can encounter aggregation in physiological and pathological contexts. In this work, we addressed the issue of how electrostatic charges can influence aggregation propensity by using the N-terminus moiety of the measles virus phosphoprotein, PNT, as a model IDP. Taking advantage of the high sequence designability of IDPs, we have produced an array of PNT variants sharing the same hydrophobicity, but differing in net charges per residue and isoelectric points (pI). The solubility and conformational properties of these proteins were analysed through biochemical and biophysical techniques in a wide range of pH values and compared with those of the green fluorescence protein (GFP), a globular protein with lower net charge per residue, but similar hydrophobicity. Tested proteins showed a solubility minimum close to their pI, as expected, but the pH-dependent decrease of solubility was not uniform and driven by the net charge per residue of each variant. A parallel behaviour was observed also in fusion proteins between PNT variants and GFP, which minimally contributes to the solubility of chimeras. Our data suggest that the overall solubility of a protein can be dictated by protein regions endowed with higher net charge per residue and, hence, prompter to respond to pH changes. This finding could be exploited for biotechnical purposes, such as the design of solubility/aggregation tags, and in studies aimed to clarify the pathological and physiological behaviour of IDPs.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  IDPs; Isoelectric point; NCPR; Protein aggregation; Protein solubility

Mesh:

Substances:

Year:  2017        PMID: 28890401     DOI: 10.1016/j.bbagen.2017.09.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta Gen Subj        ISSN: 0304-4165            Impact factor:   3.770


  7 in total

1.  Prediction of the Effect of pH on the Aggregation and Conditional Folding of Intrinsically Disordered Proteins with SolupHred and DispHred.

Authors:  Valentín Iglesias; Carlos Pintado-Grima; Jaime Santos; Marc Fornt; Salvador Ventura
Journal:  Methods Mol Biol       Date:  2022

2.  pH-Dependent Aggregation in Intrinsically Disordered Proteins Is Determined by Charge and Lipophilicity.

Authors:  Jaime Santos; Valentín Iglesias; Juan Santos-Suárez; Marco Mangiagalli; Stefania Brocca; Irantzu Pallarès; Salvador Ventura
Journal:  Cells       Date:  2020-01-08       Impact factor: 6.600

3.  Exploring the use of leucine zippers for the generation of a new class of inclusion bodies for pharma and biotechnological applications.

Authors:  Ramon Roca-Pinilla; Sara Fortuna; Antonino Natalello; Alejandro Sánchez-Chardi; Diletta Ami; Anna Arís; Elena Garcia-Fruitós
Journal:  Microb Cell Fact       Date:  2020-09-04       Impact factor: 5.328

4.  Evolutionary Study of Disorder in Protein Sequences.

Authors:  Kristina Kastano; Gábor Erdős; Pablo Mier; Gregorio Alanis-Lobato; Vasilis J Promponas; Zsuzsanna Dosztányi; Miguel A Andrade-Navarro
Journal:  Biomolecules       Date:  2020-10-06

Review 5.  Relevance of Electrostatic Charges in Compactness, Aggregation, and Phase Separation of Intrinsically Disordered Proteins.

Authors:  Greta Bianchi; Sonia Longhi; Rita Grandori; Stefania Brocca
Journal:  Int J Mol Sci       Date:  2020-08-27       Impact factor: 5.923

6.  High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance.

Authors:  Yuki Yoshida; Nurislam Shaikhutdinov; Olga Kozlova; Masayoshi Itoh; Michihira Tagami; Mitsuyoshi Murata; Hiromi Nishiyori-Sueki; Miki Kojima-Ishiyama; Shohei Noma; Alexander Cherkasov; Guzel Gazizova; Aigul Nasibullina; Ruslan Deviatiiarov; Elena Shagimardanova; Alina Ryabova; Katsushi Yamaguchi; Takahiro Bino; Shuji Shigenobu; Shoko Tokumoto; Yugo Miyata; Richard Cornette; Takahiro G Yamada; Akira Funahashi; Masaru Tomita; Oleg Gusev; Takahiro Kikawada
Journal:  NAR Genom Bioinform       Date:  2022-04-05

7.  Coiled-coil inspired functional inclusion bodies.

Authors:  Marcos Gil-Garcia; Susanna Navarro; Salvador Ventura
Journal:  Microb Cell Fact       Date:  2020-06-01       Impact factor: 5.328

  7 in total

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