Literature DB >> 28889005

A flexible graphical model for multi-modal parcellation of the cortex.

Sarah Parisot1, Ben Glocker2, Sofia Ira Ktena2, Salim Arslan2, Markus D Schirmer3, Daniel Rueckert2.   

Abstract

Advances in neuroimaging have provided a tremendous amount of in-vivo information on the brain's organisation. Its anatomy and cortical organisation can be investigated from the point of view of several imaging modalities, many of which have been studied for mapping functionally specialised cortical areas. There is strong evidence that a single modality is not sufficient to fully identify the brain's cortical organisation. Combining multiple modalities in the same parcellation task has the potential to provide more accurate and robust subdivisions of the cortex. Nonetheless, existing brain parcellation methods are typically developed and tested on single modalities using a specific type of information. In this paper, we propose Graph-based Multi-modal Parcellation (GraMPa), an iterative framework designed to handle the large variety of available input modalities to tackle the multi-modal parcellation task. At each iteration, we compute a set of parcellations from different modalities and fuse them based on their local reliabilities. The fused parcellation is used to initialise the next iteration, forcing the parcellations to converge towards a set of mutually informed modality specific parcellations, where correspondences are established. We explore two different multi-modal configurations for group-wise parcellation using resting-state fMRI, diffusion MRI tractography, myelin maps and task fMRI. Quantitative and qualitative results on the Human Connectome Project database show that integrating multi-modal information yields a stronger agreement with well established atlases and more robust connectivity networks that provide a better representation of the population.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Brain connectivity; Connectomics; Cortex parcellation; Markov random fields; diffusion Magnetic Resonance Imaging; functional Magnetic Resonance Imaging

Mesh:

Year:  2017        PMID: 28889005      PMCID: PMC6440540          DOI: 10.1016/j.neuroimage.2017.09.005

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  43 in total

1.  Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain.

Authors:  N Tzourio-Mazoyer; B Landeau; D Papathanassiou; F Crivello; O Etard; N Delcroix; B Mazoyer; M Joliot
Journal:  Neuroimage       Date:  2002-01       Impact factor: 6.556

Review 2.  The anatomical basis of functional localization in the cortex.

Authors:  Richard E Passingham; Klaas E Stephan; Rolf Kötter
Journal:  Nat Rev Neurosci       Date:  2002-08       Impact factor: 34.870

3.  Cytoarchitecture of the cerebral cortex--more than localization.

Authors:  K Amunts; A Schleicher; K Zilles
Journal:  Neuroimage       Date:  2007-03-03       Impact factor: 6.556

4.  Dense image registration through MRFs and efficient linear programming.

Authors:  Ben Glocker; Nikos Komodakis; Georgios Tziritas; Nassir Navab; Nikos Paragios
Journal:  Med Image Anal       Date:  2008-04-07       Impact factor: 8.545

5.  Defining functional areas in individual human brains using resting functional connectivity MRI.

Authors:  Alexander L Cohen; Damien A Fair; Nico U F Dosenbach; Francis M Miezin; Donna Dierker; David C Van Essen; Bradley L Schlaggar; Steven E Petersen
Journal:  Neuroimage       Date:  2008-03-25       Impact factor: 6.556

6.  Approximate labeling via graph cuts based on linear programming.

Authors:  Nikos Komodakis; Georgios Tziritas
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2007-08       Impact factor: 6.226

7.  Neurophysiological architecture of functional magnetic resonance images of human brain.

Authors:  Raymond Salvador; John Suckling; Martin R Coleman; John D Pickard; David Menon; Ed Bullmore
Journal:  Cereb Cortex       Date:  2005-01-05       Impact factor: 5.357

8.  Mapping the structural core of human cerebral cortex.

Authors:  Patric Hagmann; Leila Cammoun; Xavier Gigandet; Reto Meuli; Christopher J Honey; Van J Wedeen; Olaf Sporns
Journal:  PLoS Biol       Date:  2008-07-01       Impact factor: 8.029

9.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

Authors:  T E J Behrens; H Johansen Berg; S Jbabdi; M F S Rushworth; M W Woolrich
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

10.  Cortical folding patterns and predicting cytoarchitecture.

Authors:  Bruce Fischl; Niranjini Rajendran; Evelina Busa; Jean Augustinack; Oliver Hinds; B T Thomas Yeo; Hartmut Mohlberg; Katrin Amunts; Karl Zilles
Journal:  Cereb Cortex       Date:  2007-12-12       Impact factor: 5.357

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  1 in total

Review 1.  Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans.

Authors:  David C Van Essen; Matthew F Glasser
Journal:  Neuron       Date:  2018-08-22       Impact factor: 17.173

  1 in total

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