Literature DB >> 28887733

Computational design of bio-inspired carnosine-based HOBr antioxidants.

Farzaneh Sarrami1, Li-Juan Yu1, Amir Karton2.   

Abstract

During a respiratory burst the enzyme myeloperoxidase generates significant amounts of hypohalous acids (HOX, X = Cl and Br) in order to inflict oxidative damage upon invading pathogens. However, excessive production of these potent oxidants is associated with numerous inflammatory diseases. It has been suggested that the endogenous antioxidant carnosine is an effective HOCl scavenger. Recent computational and experimental studies suggested that an intramolecular Cl+ transfer from the imidazole ring to the terminal amine might play an important role in the antioxidant activity of carnosine. Based on high-level ab initio calculations, we propose a similar reaction mechanism for the intramolecular Br+ transfer in carnosine. These results suggest that carnosine may be an effective HOBr scavenger. On the basis of the proposed reaction mechanism, we proceed to design systems that share similar structural features to carnosine but with enhanced HOX scavenging capabilities for X = Cl and Br. We find that (i) elongating the β-alanyl-glycyl side chain by one carbon reduces the reaction barriers by up to 44%, and (ii) substituting the imidazole ring with strong electron-donating groups reduces the reaction barriers by similar amounts. We also show that the above structural and electronic effects are largely additive. In an antioxidant candidate that involves both of these effects the reaction barriers are reduced by 71%.

Entities:  

Keywords:  Antioxidant design; CCSD(T); Computational chemistry; G4(MP2) theory; Molecular design

Mesh:

Substances:

Year:  2017        PMID: 28887733     DOI: 10.1007/s10822-017-0060-3

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  44 in total

1.  Gaussian-4 theory using reduced order perturbation theory.

Authors:  Larry A Curtiss; Paul C Redfern; Krishnan Raghavachari
Journal:  J Chem Phys       Date:  2007-09-28       Impact factor: 3.488

2.  Effect of the damping function in dispersion corrected density functional theory.

Authors:  Stefan Grimme; Stephan Ehrlich; Lars Goerigk
Journal:  J Comput Chem       Date:  2011-03-01       Impact factor: 3.376

3.  Accurate reaction barrier heights of pericyclic reactions: Surprisingly large deviations for the CBS-QB3 composite method and their consequences in DFT benchmark studies.

Authors:  Amir Karton; Lars Goerigk
Journal:  J Comput Chem       Date:  2015-02-03       Impact factor: 3.376

4.  Evidence for rapid inter- and intramolecular chlorine transfer reactions of histamine and carnosine chloramines: implications for the prevention of hypochlorous-acid-mediated damage.

Authors:  David I Pattison; Michael J Davies
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

Review 5.  The role of hypothiocyanous acid (HOSCN) in biological systems.

Authors:  Clare L Hawkins
Journal:  Free Radic Res       Date:  2009-12

Review 6.  Hypochlorite-induced oxidation of amino acids, peptides and proteins.

Authors:  C L Hawkins; D I Pattison; M J Davies
Journal:  Amino Acids       Date:  2003-07-29       Impact factor: 3.520

Review 7.  Myeloperoxidase: molecular mechanisms of action and their relevance to human health and disease.

Authors:  Betty S van der Veen; Menno P J de Winther; Peter Heeringa
Journal:  Antioxid Redox Signal       Date:  2009-11       Impact factor: 8.401

8.  Molecular identification of carnosine synthase as ATP-grasp domain-containing protein 1 (ATPGD1).

Authors:  Jakub Drozak; Maria Veiga-da-Cunha; Didier Vertommen; Vincent Stroobant; Emile Van Schaftingen
Journal:  J Biol Chem       Date:  2010-01-22       Impact factor: 5.157

9.  Bromination of deoxycytidine by eosinophil peroxidase: a mechanism for mutagenesis by oxidative damage of nucleotide precursors.

Authors:  J P Henderson; J Byun; M V Williams; M L McCormick; W C Parks; L A Ridnour; J W Heinecke
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-06       Impact factor: 11.205

10.  Avogadro: an advanced semantic chemical editor, visualization, and analysis platform.

Authors:  Marcus D Hanwell; Donald E Curtis; David C Lonie; Tim Vandermeersch; Eva Zurek; Geoffrey R Hutchison
Journal:  J Cheminform       Date:  2012-08-13       Impact factor: 5.514

View more
  1 in total

1.  Measuring peroxidasin activity in live cells using bromide addition for signal amplification.

Authors:  Veronika F S Pape; Hajnal A Kovács; István Szatmári; Imre Ugrai; Bence Szikora; Imre Kacskovics; Zoltán May; Norbert Szoboszlai; Gábor Sirokmány; Miklós Geiszt
Journal:  Redox Biol       Date:  2022-06-30       Impact factor: 10.787

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.